RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 TTC32Q5I0X7 151 aa11.21□□□□□ -0.61
CUX1-215ENST00000556210 SUMO4Q6EEV6 95 aa11.21□□□□□ -0.61
CUX1-215ENST00000556210 ZFAND2AQ8N6M9 145 aa11.21□□□□□ -0.61
CUX1-215ENST00000556210 FLNAP21333 2647 aaKnown RBP11.21□□□□□ -0.62
CUX1-215ENST00000556210 A6NDX4 124 aa11.21□□□□□ -0.62
CUX1-215ENST00000556210 E9PLD3 99 aa11.21□□□□□ -0.62
CUX1-215ENST00000556210 C20orf78Q9BR46 151 aa11.2□□□□□ -0.62
CUX1-215ENST00000556210 TM2D2Q9BX73 214 aa11.2□□□□□ -0.62
CUX1-215ENST00000556210 IGSF10Q6WRI0 2623 aa11.2□□□□□ -0.62
CUX1-215ENST00000556210 SNCGO76070 127 aa11.2□□□□□ -0.62
CUX1-215ENST00000556210 CEMP1Q6PRD7 247 aaPredicted RBP11.2□□□□□ -0.62
CUX1-215ENST00000556210 C18orf65Q6ZTR6 163 aa11.2□□□□□ -0.62
CUX1-215ENST00000556210 TEX29Q8N6K0 151 aa11.2□□□□□ -0.62
CUX1-215ENST00000556210 SPANXB1Q9NS25 103 aaPredicted RBP11.2□□□□□ -0.62
CUX1-215ENST00000556210 HHLA3Q9XRX5 114 aa11.2□□□□□ -0.62
CUX1-215ENST00000556210 PTH2Q96A98 100 aa11.2□□□□□ -0.62
CUX1-215ENST00000556210 PEMTQ9UBM1 199 aa11.2□□□□□ -0.62
CUX1-215ENST00000556210 TRAV13-1A0A0B4J241 112 aa11.19□□□□□ -0.62
CUX1-215ENST00000556210 RASL10AQ92737 203 aa11.19□□□□□ -0.62
CUX1-215ENST00000556210 CUBNO60494 3623 aa11.19□□□□□ -0.62
CUX1-215ENST00000556210 C9JAW5 83 aa11.19□□□□□ -0.62
CUX1-215ENST00000556210 MEIG1Q5JSS6 88 aa11.19□□□□□ -0.62
CUX1-215ENST00000556210 VPREB3Q9UKI3 123 aa11.19□□□□□ -0.62
CUX1-215ENST00000556210 DSCR9P59020 149 aa11.18□□□□□ -0.62
CUX1-215ENST00000556210 KRTAP10-9P60411 292 aa11.18□□□□□ -0.62
CUX1-215ENST00000556210 UTP20O75691 2785 aaKnown RBP11.18□□□□□ -0.62
CUX1-215ENST00000556210 PIFOQ8TCI5 191 aa11.18□□□□□ -0.62
CUX1-215ENST00000556210 CLUHP3Q96NS8 147 aa11.18□□□□□ -0.62
CUX1-215ENST00000556210 ERG28Q9UKR5 140 aa11.18□□□□□ -0.62
CUX1-215ENST00000556210 TRGV11A0A075B6L2 103 aa11.17□□□□□ -0.62
CUX1-215ENST00000556210 INSL3P51460 131 aa11.17□□□□□ -0.62
CUX1-215ENST00000556210 ITPR3Q14573 2671 aa11.17□□□□□ -0.62
CUX1-215ENST00000556210 RPL13AP40429 203 aaKnown RBP11.17□□□□□ -0.62
CUX1-215ENST00000556210 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.17□□□□□ -0.62
CUX1-215ENST00000556210 IGKV2-29A2NJV5 120 aaPredicted RBP11.17□□□□□ -0.62
CUX1-215ENST00000556210 UBE2L6O14933 153 aa11.17□□□□□ -0.62
CUX1-215ENST00000556210 COX6CP09669 75 aa11.17□□□□□ -0.62
CUX1-215ENST00000556210 PMVKQ15126 192 aa11.16□□□□□ -0.62
CUX1-215ENST00000556210 PPDPFLQ8WWR9 84 aa11.16□□□□□ -0.62
CUX1-215ENST00000556210 TMEM262E9PQX1 116 aa11.16□□□□□ -0.62
CUX1-215ENST00000556210 PROK1P58294 105 aa11.16□□□□□ -0.62
CUX1-215ENST00000556210 TMEM61Q8N0U2 210 aa11.16□□□□□ -0.62
CUX1-215ENST00000556210 LGALS1P09382 135 aaKnown RBP11.16□□□□□ -0.62
CUX1-215ENST00000556210 ZFAND6Q6FIF0 208 aa11.16□□□□□ -0.62
CUX1-215ENST00000556210 CHD6Q8TD26 2715 aa11.16□□□□□ -0.62
CUX1-215ENST00000556210 A0A0J9YXV3 536 aa11.15□□□□□ -0.62
CUX1-215ENST00000556210 SCGB1A1P11684 91 aa11.15□□□□□ -0.62
CUX1-215ENST00000556210 ZFP2Q6ZN57 461 aa11.15□□□□□ -0.62
CUX1-215ENST00000556210 MRPL53Q96EL3 112 aaKnown RBP11.15□□□□□ -0.62
CUX1-215ENST00000556210 PF4P02776 101 aa11.15□□□□□ -0.62
CUX1-215ENST00000556210 FOXI1Q12951 378 aa11.15□□□□□ -0.62
CUX1-215ENST00000556210 BAALCQ8WXS3 180 aa11.15□□□□□ -0.62
CUX1-215ENST00000556210 C11orf68Q9H3H3 251 aaKnown RBP11.15□□□□□ -0.62
CUX1-215ENST00000556210 C11orf86A6NJI1 115 aa11.14□□□□□ -0.63
CUX1-215ENST00000556210 C1QTNF4Q9BXJ3 329 aa11.14□□□□□ -0.63
CUX1-215ENST00000556210 HTN3P15516 51 aa11.14□□□□□ -0.63
CUX1-215ENST00000556210 GATA3P23771 443 aa11.14□□□□□ -0.63
CUX1-215ENST00000556210 LINC01619G3V211 115 aa11.14□□□□□ -0.63
CUX1-215ENST00000556210 GAGE2BQ13066 116 aa11.14□□□□□ -0.63
CUX1-215ENST00000556210 GAGE2EQ4V326 116 aa11.14□□□□□ -0.63
CUX1-215ENST00000556210 GAGE2DQ9UEU5 116 aa11.14□□□□□ -0.63
CUX1-215ENST00000556210 LENEPQ9Y5L5 61 aa11.14□□□□□ -0.63
CUX1-215ENST00000556210 DEFB130BP0DP73 79 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 DEFB130AP0DP74 79 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 ZNRF2Q8NHG8 242 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 TRAV26-1A0A087WT03 109 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 GAGE12JA6NER3 117 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 SRSF2Q01130 221 aaKnown RBP11.13□□□□□ -0.63
CUX1-215ENST00000556210 GAGE4Q13068 117 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 GAGE5Q13069 117 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 SPENQ96T58 3664 aaKnown RBP11.13□□□□□ -0.63
CUX1-215ENST00000556210 CELSR1Q9NYQ6 3014 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 C19orf54Q5BKX5 351 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 NRACQ8N912 160 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 RNASE3P12724 160 aaKnown RBP11.13□□□□□ -0.63
CUX1-215ENST00000556210 TRPT1Q86TN4 253 aaKnown RBP11.13□□□□□ -0.63
CUX1-215ENST00000556210 SS18L2Q9UHA2 77 aa11.13□□□□□ -0.63
CUX1-215ENST00000556210 TEX15Q9BXT5 2789 aa11.12□□□□□ -0.63
CUX1-215ENST00000556210 PRO1854Q9UHT4 67 aa11.12□□□□□ -0.63
CUX1-215ENST00000556210 PLEKHB2Q96CS7 222 aa11.12□□□□□ -0.63
CUX1-215ENST00000556210 TRBV20-1A0A075B6N2 111 aa11.12□□□□□ -0.63
CUX1-215ENST00000556210 TRAV12-1A0A0B4J245 112 aa11.11□□□□□ -0.63
CUX1-215ENST00000556210 A0A0J9YX75 114 aa11.11□□□□□ -0.63
CUX1-215ENST00000556210 ZNF415Q09FC8 603 aa11.11□□□□□ -0.63
CUX1-215ENST00000556210 HRNRQ86YZ3 2850 aaPredicted RBP11.11□□□□□ -0.63
CUX1-215ENST00000556210 TRGV4A0A0C4DH28 118 aa11.11□□□□□ -0.63
CUX1-215ENST00000556210 J3QQQ9 107 aa11.11□□□□□ -0.63
CUX1-215ENST00000556210 TOMM6Q96B49 74 aa11.11□□□□□ -0.63
CUX1-215ENST00000556210 I3L3M4 83 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 GAGE7O76087 117 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 GAGE12FP0CL80 117 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 GAGE12GP0CL81 117 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 GAGE12IP0CL82 117 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 H3BUA1 57 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 ELANEP08246 267 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 DAND5Q8N907 189 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 WFDC11Q8NEX6 87 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 A0A096LPF7 62 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 GPHB5Q86YW7 130 aa11.1□□□□□ -0.63
CUX1-215ENST00000556210 SLC25A20O43772 301 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms