RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 SURF2Q15527 256 aaPredicted RBP2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 HMGN3Q15651 99 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 AKIRIN2Q53H80 203 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 RNASE10Q5GAN6 216 aaKnown RBP2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 ZNF705AQ6ZN79 300 aaPredicted RBP2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 ZNF833PQ6ZTB9 187 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 S100A7AQ86SG5 101 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 NDUFA11Q86Y39 141 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 CLVS1Q8IUQ0 354 aaPredicted RBP2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 PDZD9Q8IXQ8 264 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 Q8N2B8 174 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 DEFB125Q8N687 156 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 TERB2Q8NHR7 220 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 MCFD2Q8NI22 146 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 MRPL30Q8TCC3 161 aaKnown RBP2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 S100ZQ8WXG8 99 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 USMG5Q96IX5 58 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 SLC25A21Q9BQT8 299 aaPredicted RBP2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 PDCD10Q9BUL8 212 aa2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 ZNF469Q96JG9 3925 aaPredicted RBP2.05□□□□□ -2.08
CKS1BP1-201ENST00000555221 TCRBV4S1A1TA0A5B7 111 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 GPR31O00270 319 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 PPYP01298 95 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 IFNA5P01569 189 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 HLA-DRB1P01911 266 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 SCTP09683 121 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 AKAIN1P0CW23 69 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 DEFA4P12838 97 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 GNG10P50151 68 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 NKX2-5P52952 324 aaPredicted RBP2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 DEFA1P59665 94 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 DEFA3P59666 94 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 LSM3P62310 102 aaKnown RBP2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 INSL4Q14641 139 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 LTC4SQ16873 150 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 GDPD1Q8N9F7 314 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 TMEM229BQ8NBD8 167 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 ZNF439Q8NDP4 499 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 NABP2Q9BQ15 211 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 COMMD5Q9GZQ3 224 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 C6orf62Q9GZU0 229 aaPredicted RBP2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 ENY2Q9NPA8 101 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 COPZ2Q9P299 210 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 PRNDQ9UKY0 176 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 TENM2Q9NT68 2774 aa2.04□□□□□ -2.08
CKS1BP1-201ENST00000555221 TRBV7-1A0A0A6YYK4 115 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 DUXBA0A1W2PPF3 345 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 FAM223BA6NKX1 122 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 A8MUN3 132 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 ZNF705FA8MVS1 300 aaPredicted RBP2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 M0R036 132 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 CORTO00230 105 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 IFNA21P01568 189 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 FABP1P07148 127 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 SAA2P0DJI9 122 aaPredicted RBP2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 SNCAP37840 140 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 CSN1S1P47710 185 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 EIF2B2P49770 351 aaKnown RBP2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 NCS1P62166 190 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 HIST1H4AP62805 103 aaKnown RBP2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 KLRD1Q13241 179 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 FXYD3Q14802 87 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 TMEM128Q5BJH2 165 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 AADACL3Q5VUY0 350 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 TRIQKQ629K1 86 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 SNX29P2Q8IUI4 249 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 FAM223AQ8IWN6 122 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 TOMM5Q8N4H5 51 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 SMIM4Q8WVI0 70 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 ISOC1Q96CN7 298 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 CIB3Q96Q77 187 aaPredicted RBP2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 PHB2Q99623 299 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 BET1LQ9NYM9 111 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 METTL1Q9UBP6 276 aaKnown RBP2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 NUBP2Q9Y5Y2 271 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 TANC2Q9HCD6 1990 aa2.03□□□□□ -2.08
CKS1BP1-201ENST00000555221 SORL1Q92673 2214 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 ABCA13Q86UQ4 5058 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 CR1P17927 2039 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 MUC2Q02817 5179 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 TRAV7A0A075B6U4 112 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 TRAV30A0A087WSZ9 112 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 H7C2G1 150 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 PGLYRP1O75594 196 aaPredicted RBP2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 NDUFA3O95167 84 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 CRYZL1O95825 349 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 CFDP00746 253 aaPredicted RBP2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 IFNA17P01571 189 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 IGHV3-7P01780 117 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 PMP2P02689 132 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 CTSDP07339 412 aaPredicted RBP2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 LGALS1P09382 135 aaKnown RBP2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 TRAPPC2P0DI81 140 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 TRAPPC2BP0DI82 140 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 SLC25A6P12236 298 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 NFYAP23511 347 aaPredicted RBP2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 PIGPP57054 158 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 FXYD4P59646 89 aa2.02□□□□□ -2.09
CKS1BP1-201ENST00000555221 RAB14P61106 215 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms