RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 URGCP-MRPS24S4R325 110 aa9.78□□□□□ -0.84
CCDC88C-207ENST00000554051 SSTP61278 116 aa9.77□□□□□ -0.85
CCDC88C-207ENST00000554051 ADIRFQ15847 76 aa9.77□□□□□ -0.85
CCDC88C-207ENST00000554051 NEXN-AS1Q8NBZ9 246 aa9.77□□□□□ -0.85
CCDC88C-207ENST00000554051 GTSF1Q8WW33 167 aa9.77□□□□□ -0.85
CCDC88C-207ENST00000554051 ISOC2Q96AB3 205 aa9.77□□□□□ -0.85
CCDC88C-207ENST00000554051 TNFRSF18Q9Y5U5 241 aa9.77□□□□□ -0.85
CCDC88C-207ENST00000554051 A0A1B0GVY2 172 aa9.76□□□□□ -0.85
CCDC88C-207ENST00000554051 RPL23P62829 140 aaKnown RBP9.76□□□□□ -0.85
CCDC88C-207ENST00000554051 CLLU1Q5K131 121 aa9.76□□□□□ -0.85
CCDC88C-207ENST00000554051 SUMO4Q6EEV6 95 aa9.76□□□□□ -0.85
CCDC88C-207ENST00000554051 EPPK1P58107 5090 aaKnown RBP9.75□□□□□ -0.85
CCDC88C-207ENST00000554051 M0QY20 66 aa9.75□□□□□ -0.85
CCDC88C-207ENST00000554051 EREGO14944 169 aa9.75□□□□□ -0.85
CCDC88C-207ENST00000554051 ELOBQ15370 118 aa9.75□□□□□ -0.85
CCDC88C-207ENST00000554051 RASL11AQ6T310 242 aa9.75□□□□□ -0.85
CCDC88C-207ENST00000554051 A0A1B0GUT8 65 aa9.74□□□□□ -0.85
CCDC88C-207ENST00000554051 HIGD1CA8MV81 97 aa9.74□□□□□ -0.85
CCDC88C-207ENST00000554051 IBA57-AS1B1ANH7 110 aa9.74□□□□□ -0.85
CCDC88C-207ENST00000554051 PNRC1Q12796 327 aaPredicted RBP9.74□□□□□ -0.85
CCDC88C-207ENST00000554051 NAT8BQ9UHF3 227 aa9.74□□□□□ -0.85
CCDC88C-207ENST00000554051 V9GYV3 84 aa9.74□□□□□ -0.85
CCDC88C-207ENST00000554051 A0A087WX48 190 aa9.73□□□□□ -0.85
CCDC88C-207ENST00000554051 TRBV6-8A0A0A6YYG3 113 aa9.73□□□□□ -0.85
CCDC88C-207ENST00000554051 C9JQL5 133 aa9.73□□□□□ -0.85
CCDC88C-207ENST00000554051 SRSF3P84103 164 aaKnown RBP9.73□□□□□ -0.85
CCDC88C-207ENST00000554051 TNP2Q05952 138 aa9.73□□□□□ -0.85
CCDC88C-207ENST00000554051 Q6ZRN7 208 aaPredicted RBP9.73□□□□□ -0.85
CCDC88C-207ENST00000554051 PGLYRP4Q96LB8 373 aa9.73□□□□□ -0.85
CCDC88C-207ENST00000554051 Q9UF83 564 aa9.73□□□□□ -0.85
CCDC88C-207ENST00000554051 DNAH10Q8IVF4 4471 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 TRBV25-1A0A075B6N4 114 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 TRAV8-3A0A0A6YYJ7 113 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 A0A1B0GW15 77 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 IGHV3-30P01768 117 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 IGHV3-33P01772 117 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 IGHV3-30-3P0DP02 117 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 IGHV3-30-5P0DP03 117 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 RIGQ13278 110 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 UQCC3Q6UW78 93 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 NIT1Q86X76 327 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 RMI2Q96E14 147 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 TM2D2Q9BX73 214 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 NIT2Q9NQR4 276 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 BIRC6Q9NR09 4857 aa9.72□□□□□ -0.85
CCDC88C-207ENST00000554051 PPP1R2P9O14990 202 aa9.71□□□□□ -0.86
CCDC88C-207ENST00000554051 S100A8P05109 93 aa9.71□□□□□ -0.86
CCDC88C-207ENST00000554051 COX11Q9Y6N1 276 aa9.71□□□□□ -0.86
CCDC88C-207ENST00000554051 PSCAO43653 123 aa9.7□□□□□ -0.86
CCDC88C-207ENST00000554051 IQCJQ1A5X6 159 aa9.7□□□□□ -0.86
CCDC88C-207ENST00000554051 TMEM191AQ9H0A3 160 aa9.7□□□□□ -0.86
CCDC88C-207ENST00000554051 IGHV1-24A0A0C4DH33 117 aa9.69□□□□□ -0.86
CCDC88C-207ENST00000554051 SMIM27A0A1W2PRY6 76 aa9.69□□□□□ -0.86
CCDC88C-207ENST00000554051 PPP1R17O96001 155 aa9.69□□□□□ -0.86
CCDC88C-207ENST00000554051 CDPF1Q6NVV7 123 aa9.69□□□□□ -0.86
CCDC88C-207ENST00000554051 FRAS1Q86XX4 4008 aa9.69□□□□□ -0.86
CCDC88C-207ENST00000554051 MRAP2Q96G30 205 aa9.69□□□□□ -0.86
CCDC88C-207ENST00000554051 CHCHD5Q9BSY4 110 aa9.69□□□□□ -0.86
CCDC88C-207ENST00000554051 HECTD4Q9Y4D8 3996 aa9.69□□□□□ -0.86
CCDC88C-207ENST00000554051 NCR2O95944 276 aa9.68□□□□□ -0.86
CCDC88C-207ENST00000554051 Q0VG73 95 aa9.68□□□□□ -0.86
CCDC88C-207ENST00000554051 COTL1Q14019 142 aa9.68□□□□□ -0.86
CCDC88C-207ENST00000554051 NUP35Q8NFH5 326 aa9.68□□□□□ -0.86
CCDC88C-207ENST00000554051 CRPP02741 224 aa9.67□□□□□ -0.86
CCDC88C-207ENST00000554051 GATD1Q8NB37 220 aa9.67□□□□□ -0.86
CCDC88C-207ENST00000554051 Q9HAA7 133 aa9.67□□□□□ -0.86
CCDC88C-207ENST00000554051 TMEM262E9PQX1 116 aa9.66□□□□□ -0.86
CCDC88C-207ENST00000554051 MT-ND4LP03901 98 aa9.66□□□□□ -0.86
CCDC88C-207ENST00000554051 ANAPC16Q96DE5 110 aa9.66□□□□□ -0.86
CCDC88C-207ENST00000554051 TMEM243Q9BU79 118 aa9.66□□□□□ -0.86
CCDC88C-207ENST00000554051 TRBV6-5A0A0K0K1A5 114 aa9.65□□□□□ -0.86
CCDC88C-207ENST00000554051 C16orf90A8MZG2 172 aa9.65□□□□□ -0.86
CCDC88C-207ENST00000554051 IFITM2Q01629 132 aa9.65□□□□□ -0.86
CCDC88C-207ENST00000554051 ATP5L2Q7Z4Y8 100 aa9.65□□□□□ -0.86
CCDC88C-207ENST00000554051 SPATA12Q7Z6I5 190 aa9.65□□□□□ -0.86
CCDC88C-207ENST00000554051 DNAH2Q9P225 4427 aa9.65□□□□□ -0.87
CCDC88C-207ENST00000554051 FAT2Q9NYQ8 4349 aa9.65□□□□□ -0.87
CCDC88C-207ENST00000554051 A0A087WTM6 91 aa9.64□□□□□ -0.87
CCDC88C-207ENST00000554051 TRAV26-2A0A0B4J265 109 aa9.64□□□□□ -0.87
CCDC88C-207ENST00000554051 F8W036 122 aa9.64□□□□□ -0.87
CCDC88C-207ENST00000554051 UBE2L6O14933 153 aa9.64□□□□□ -0.87
CCDC88C-207ENST00000554051 AMTP48728 403 aa9.64□□□□□ -0.87
CCDC88C-207ENST00000554051 HBBP68871 147 aa9.64□□□□□ -0.87
CCDC88C-207ENST00000554051 NTM-AS1Q6ZSK4 140 aa9.64□□□□□ -0.87
CCDC88C-207ENST00000554051 KLK12Q9UKR0 248 aa9.64□□□□□ -0.87
CCDC88C-207ENST00000554051 DNAH17Q9UFH2 4485 aa9.63□□□□□ -0.87
CCDC88C-207ENST00000554051 SDHAF1A6NFY7 115 aa9.63□□□□□ -0.87
CCDC88C-207ENST00000554051 H7C423 109 aa9.63□□□□□ -0.87
CCDC88C-207ENST00000554051 MIAQ16674 131 aa9.63□□□□□ -0.87
CCDC88C-207ENST00000554051 MPV17L2Q567V2 206 aa9.63□□□□□ -0.87
CCDC88C-207ENST00000554051 ATRAIDQ6UW56 229 aa9.63□□□□□ -0.87
CCDC88C-207ENST00000554051 NTN5Q8WTR8 489 aaPredicted RBP9.63□□□□□ -0.87
CCDC88C-207ENST00000554051 ST20Q9HBF5 79 aa9.63□□□□□ -0.87
CCDC88C-207ENST00000554051 PGPEP1Q9NXJ5 209 aa9.63□□□□□ -0.87
CCDC88C-207ENST00000554051 A0A1B0GUV1 79 aa9.62□□□□□ -0.87
CCDC88C-207ENST00000554051 LINC00862A6NCI5 91 aa9.62□□□□□ -0.87
CCDC88C-207ENST00000554051 I3L3M4 83 aa9.62□□□□□ -0.87
CCDC88C-207ENST00000554051 APCSP02743 223 aa9.62□□□□□ -0.87
CCDC88C-207ENST00000554051 ANGP03950 147 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-207ENST00000554051 RAB4AP20338 218 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms