RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 ODF3Q96PU9 254 aa10.76□□□□□ -0.69
ACTN1-211ENST00000553882 SPXQ9BT56 116 aa10.76□□□□□ -0.69
ACTN1-211ENST00000553882 IGHV3-73A0A0B4J1V6 119 aa10.76□□□□□ -0.69
ACTN1-211ENST00000553882 SLURP1P55000 103 aa10.76□□□□□ -0.69
ACTN1-211ENST00000553882 TCTEX1D4Q5JR98 221 aa10.76□□□□□ -0.69
ACTN1-211ENST00000553882 DUX3Q96PT4 197 aa10.76□□□□□ -0.69
ACTN1-211ENST00000553882 ZNF702PQ9H963 129 aa10.76□□□□□ -0.69
ACTN1-211ENST00000553882 NBPF19A0A087WUL8 3843 aa10.75□□□□□ -0.69
ACTN1-211ENST00000553882 RBMY1A1P0DJD3 496 aaKnown RBP10.75□□□□□ -0.69
ACTN1-211ENST00000553882 RBMY1CP0DJD4 496 aa10.75□□□□□ -0.69
ACTN1-211ENST00000553882 TSPEAR-AS2P59090 65 aa10.75□□□□□ -0.69
ACTN1-211ENST00000553882 WFDC2Q14508 124 aa10.75□□□□□ -0.69
ACTN1-211ENST00000553882 RBMY1FQ15415 496 aaKnown RBP10.75□□□□□ -0.69
ACTN1-211ENST00000553882 RRN3P1Q2M238 152 aa10.75□□□□□ -0.69
ACTN1-211ENST00000553882 WNK1Q9H4A3 2382 aa10.75□□□□□ -0.69
ACTN1-211ENST00000553882 NOTCH3Q9UM47 2321 aa10.75□□□□□ -0.69
ACTN1-211ENST00000553882 TIMM17AQ99595 171 aa10.75□□□□□ -0.69
ACTN1-211ENST00000553882 UBR5O95071 2799 aaPredicted RBP10.75□□□□□ -0.69
ACTN1-211ENST00000553882 HERVK_113P61574 105 aa10.74□□□□□ -0.69
ACTN1-211ENST00000553882 TMEM141Q96I45 108 aa10.74□□□□□ -0.69
ACTN1-211ENST00000553882 PGPEP1Q9NXJ5 209 aa10.74□□□□□ -0.69
ACTN1-211ENST00000553882 TRBV6-5A0A0K0K1A5 114 aa10.74□□□□□ -0.69
ACTN1-211ENST00000553882 TMEM89A2RUT3 159 aa10.74□□□□□ -0.69
ACTN1-211ENST00000553882 A4D1N5 150 aa10.74□□□□□ -0.69
ACTN1-211ENST00000553882 NIPBLQ6KC79 2804 aaeCLIP10.74□□□□□ -0.69
ACTN1-211ENST00000553882 CCDC168Q8NDH2 2452 aa10.74□□□□□ -0.69
ACTN1-211ENST00000553882 TMEM238C9JI98 176 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 LINC01619G3V211 115 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 J3QLI3 93 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 ELANEP08246 267 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 UBE2E2Q96LR5 201 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 MRPL16Q9NX20 251 aaKnown RBP10.73□□□□□ -0.69
ACTN1-211ENST00000553882 A0A1B0GWB2 263 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 P0DMU3 169 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 FAM231AP0DMU4 169 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 FAM231CP0DMU5 169 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 DEFB131AP59861 70 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 KRTAP10-9P60411 292 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 Q6YL49 198 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 AKAP9Q99996 3911 aa10.73□□□□□ -0.69
ACTN1-211ENST00000553882 IGHV3-64A0A075B6Q5 118 aa10.72□□□□□ -0.69
ACTN1-211ENST00000553882 APOMO95445 188 aa10.72□□□□□ -0.69
ACTN1-211ENST00000553882 PROK1P58294 105 aa10.72□□□□□ -0.69
ACTN1-211ENST00000553882 KHDC1LQ5JSQ8 128 aa10.72□□□□□ -0.69
ACTN1-211ENST00000553882 PAPPA-AS1Q5QFB9 102 aa10.72□□□□□ -0.69
ACTN1-211ENST00000553882 TRPT1Q86TN4 253 aaKnown RBP10.72□□□□□ -0.69
ACTN1-211ENST00000553882 LINC01549A6NIU2 74 aa10.72□□□□□ -0.69
ACTN1-211ENST00000553882 SH2D6Q7Z4S9 175 aa10.72□□□□□ -0.69
ACTN1-211ENST00000553882 APCP25054 2843 aa10.72□□□□□ -0.69
ACTN1-211ENST00000553882 A0A0J9YY99 117 aa10.71□□□□□ -0.69
ACTN1-211ENST00000553882 ETDBQ3ZM63 59 aa10.71□□□□□ -0.69
ACTN1-211ENST00000553882 CR1P17927 2039 aa10.71□□□□□ -0.69
ACTN1-211ENST00000553882 IGHV4-31P0DP07 118 aa10.71□□□□□ -0.69
ACTN1-211ENST00000553882 NSUN5P1Q3KNT7 163 aa10.7□□□□□ -0.7
ACTN1-211ENST00000553882 TRGV11A0A075B6L2 103 aa10.7□□□□□ -0.7
ACTN1-211ENST00000553882 F8W1H4 67 aa10.7□□□□□ -0.7
ACTN1-211ENST00000553882 I3L3M4 83 aa10.7□□□□□ -0.7
ACTN1-211ENST00000553882 Q9UF83 564 aa10.7□□□□□ -0.7
ACTN1-211ENST00000553882 PRRC2AP48634 2157 aaKnown RBP10.69□□□□□ -0.7
ACTN1-211ENST00000553882 LOC107984156A0A0G2JMH3 177 aa10.69□□□□□ -0.7
ACTN1-211ENST00000553882 J3QQQ9 107 aa10.69□□□□□ -0.7
ACTN1-211ENST00000553882 ARL17AQ8IVW1 177 aa10.69□□□□□ -0.7
ACTN1-211ENST00000553882 C20orf203Q8NBC4 194 aa10.69□□□□□ -0.7
ACTN1-211ENST00000553882 UBE2D1P51668 147 aa10.69□□□□□ -0.7
ACTN1-211ENST00000553882 RHOHQ15669 191 aa10.69□□□□□ -0.7
ACTN1-211ENST00000553882 GAGE13Q4V321 117 aa10.69□□□□□ -0.7
ACTN1-211ENST00000553882 TMEM61Q8N0U2 210 aa10.69□□□□□ -0.7
ACTN1-211ENST00000553882 BBC3Q96PG8 261 aaPredicted RBP10.69□□□□□ -0.7
ACTN1-211ENST00000553882 SPANXB1Q9NS25 103 aaPredicted RBP10.69□□□□□ -0.7
ACTN1-211ENST00000553882 RBMY1BA6NDE4 496 aaKnown RBP10.68□□□□□ -0.7
ACTN1-211ENST00000553882 RBMY1EA6NEQ0 496 aaKnown RBP10.68□□□□□ -0.7
ACTN1-211ENST00000553882 FSHBP01225 129 aa10.68□□□□□ -0.7
ACTN1-211ENST00000553882 RBMY1DP0C7P1 496 aaKnown RBP10.68□□□□□ -0.7
ACTN1-211ENST00000553882 ITPR3Q14573 2671 aa10.68□□□□□ -0.7
ACTN1-211ENST00000553882 TSPAN13O95857 204 aa10.68□□□□□ -0.7
ACTN1-211ENST00000553882 LGALS3P17931 250 aaKnown RBP10.68□□□□□ -0.7
ACTN1-211ENST00000553882 CEMP1Q6PRD7 247 aaPredicted RBP10.68□□□□□ -0.7
ACTN1-211ENST00000553882 NACAE9PAV3 2078 aa10.68□□□□□ -0.7
ACTN1-211ENST00000553882 A0A0J9YXV3 536 aa10.67□□□□□ -0.7
ACTN1-211ENST00000553882 H3BMM0 161 aa10.67□□□□□ -0.7
ACTN1-211ENST00000553882 RNASE13Q5GAN3 156 aaKnown RBP10.67□□□□□ -0.7
ACTN1-211ENST00000553882 SHISA2Q6UWI4 295 aa10.67□□□□□ -0.7
ACTN1-211ENST00000553882 AMELXQ99217 191 aa10.67□□□□□ -0.7
ACTN1-211ENST00000553882 SPAG8Q99932 426 aaPredicted RBP10.67□□□□□ -0.7
ACTN1-211ENST00000553882 JMJD1CQ15652 2540 aa10.66□□□□□ -0.7
ACTN1-211ENST00000553882 IGLV4-3A0A075B6K6 122 aa10.66□□□□□ -0.7
ACTN1-211ENST00000553882 VCX2Q9H322 139 aa10.66□□□□□ -0.7
ACTN1-211ENST00000553882 PRO0461Q9UI25 63 aa10.66□□□□□ -0.7
ACTN1-211ENST00000553882 IGHV3-30P01768 117 aa10.66□□□□□ -0.7
ACTN1-211ENST00000553882 IGHV3-30-5P0DP03 117 aa10.66□□□□□ -0.7
ACTN1-211ENST00000553882 NFE4Q86UQ8 179 aa10.66□□□□□ -0.7
ACTN1-211ENST00000553882 RNF152Q8N8N0 203 aa10.66□□□□□ -0.7
ACTN1-211ENST00000553882 SLC25A29Q8N8R3 303 aa10.66□□□□□ -0.7
ACTN1-211ENST00000553882 ZNF22P17026 224 aaPredicted RBP10.65□□□□□ -0.7
ACTN1-211ENST00000553882 NDUFA11Q86Y39 141 aa10.65□□□□□ -0.7
ACTN1-211ENST00000553882 PSMB2P49721 201 aa10.65□□□□□ -0.71
ACTN1-211ENST00000553882 INSL3P51460 131 aa10.65□□□□□ -0.71
ACTN1-211ENST00000553882 Q6ZSN1 163 aa10.65□□□□□ -0.71
ACTN1-211ENST00000553882 DLX4Q92988 240 aaPredicted RBP10.65□□□□□ -0.71
ACTN1-211ENST00000553882 FLNAP21333 2647 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms