RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 RBMY1EA6NEQ0 496 aaKnown RBP4.13□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE10A6NGK3 116 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 J3QKU1 62 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 J3QLI3 93 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 RBMY1DP0C7P1 496 aaKnown RBP4.13□□□□□ -1.75
LIMA1-215ENST00000552823 AMTNQ6UX39 209 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 TRBV25-1A0A075B6N4 114 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 A8MZ25 164 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 K7EMT4 169 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 CCL24O00175 119 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 CRIP2P52943 208 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-215ENST00000552823 STHQ8IWL8 128 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 SYT8Q8NBV8 401 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 RAX2Q96IS3 184 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 CHAC1Q9BUX1 264 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 ZNF815PA8K554 130 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 RPL24P83731 157 aaKnown RBP4.12□□□□□ -1.75
LIMA1-215ENST00000552823 ZFP2Q6ZN57 461 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 Q6ZSN1 163 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 COX8CQ7Z4L0 72 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 RNASE8Q8TDE3 154 aaKnown RBP4.12□□□□□ -1.75
LIMA1-215ENST00000552823 SPAG8Q99932 426 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-215ENST00000552823 SPXQ9BT56 116 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 CNFNQ9BYD5 112 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 ZNF580Q9UK33 172 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 HHLA3Q9XRX5 114 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 A0A087WX48 190 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 C11orf86A6NJI1 115 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 KLLNB2CW77 178 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 DEFB4AO15263 64 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 FGF6P10767 208 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 HLA-DRB4P13762 266 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 ORMDL2Q53FV1 153 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 BAALCQ8WXS3 180 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 ZNF625Q96I27 306 aaPredicted RBP4.12□□□□□ -1.75
LIMA1-215ENST00000552823 PRADC1Q9BSG0 188 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 MAP6D1Q9H9H5 199 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 PEMTQ9UBM1 199 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 TNFRSF18Q9Y5U5 241 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 HLA-DRB4X5D2U9 266 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 A0A096LPF7 62 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 A0A0J9YXV3 536 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 A4D1N5 150 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 H3BMM0 161 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 H7C1H1 209 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 PRSS2P07478 247 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 UBE2V1Q13404 147 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 DGAT2L7PQ6IED9 249 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 BOD1L2Q8IYS8 172 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 PLEKHB2Q96CS7 222 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 MRAP2Q96G30 205 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 PSMG3-AS1Q96PY0 264 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 LENEPQ9Y5L5 61 aa4.12□□□□□ -1.75
LIMA1-215ENST00000552823 VCYO14598 125 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 CIDEAO60543 219 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 CRYGDP07320 174 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 DEFB114Q30KQ6 69 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 KRTAP1-3Q8IUG1 177 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 LOC107984156A0A0G2JMH3 177 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE12BA1L429 117 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE12JA6NER3 117 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 F8VRH5 84 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE7O76087 117 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE12FP0CL80 117 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE12GP0CL81 117 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE12IP0CL82 117 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 LINC00315P59091 139 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE1Q13065 139 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE4Q13068 117 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE5Q13069 117 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 GAGE13Q4V321 117 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 FOXI2Q6ZQN5 318 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 ARL17AQ8IVW1 177 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 DEFB125Q8N687 156 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 VPS25Q9BRG1 176 aa4.11□□□□□ -1.75
LIMA1-215ENST00000552823 NSD1Q96L73 2696 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-215ENST00000552823 A6NDN8 102 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 SMIM13P0DJ93 91 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 DEFB130BP0DP73 79 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 DEFB130AP0DP74 79 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 ZNRF2Q8NHG8 242 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 LINC01006Q8NI28 216 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 ATP6V0BQ99437 205 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 NOP10Q9NPE3 64 aaKnown RBP4.1□□□□□ -1.75
LIMA1-215ENST00000552823 SPCS1Q9Y6A9 102 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 TRAV8-3A0A0A6YYJ7 113 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 NDUFA7O95182 113 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 PF4P02776 101 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 HSD52Q0P140 79 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 VCX2Q9H322 139 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 TRGV2A0A075B6R0 118 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 TRAV2A0A0B4J234 112 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 TSHBP01222 138 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 ODF3L2Q3SX64 289 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 MORN3Q6PF18 240 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-215ENST00000552823 Q6ZTI0 123 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 KIF25-AS1Q9Y6Z4 181 aa4.1□□□□□ -1.75
LIMA1-215ENST00000552823 PDZD2O15018 2839 aa4.09□□□□□ -1.75
LIMA1-215ENST00000552823 TRAV13-1A0A0B4J241 112 aa4.09□□□□□ -1.75
LIMA1-215ENST00000552823 INAFM1C9JVW0 142 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms