RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 SPAG17Q6Q759 2223 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 CUBNO60494 3623 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 HYDINQ4G0P3 5121 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 KIAA1549Q9HCM3 1950 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 DCHS2Q6V1P9 2916 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 F5P12259 2224 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 MRPS36P82909 103 aaKnown RBP2.2□□□□□ -2.06
LIMA1-210ENST00000552045 ALX1Q15699 326 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 TEX29Q8N6K0 151 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 TMEM229BQ8NBD8 167 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 PRELID3AQ96N28 172 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 LINC00052Q96N35 136 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 AIF1LQ9BQI0 150 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 BATF3Q9NR55 127 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 SPANXA1Q9NS26 97 aa2.2□□□□□ -2.06
LIMA1-210ENST00000552045 CCDC171Q6TFL3 1326 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.19□□□□□ -2.06
LIMA1-210ENST00000552045 MGAM2Q2M2H8 2515 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 TRAV13-1A0A0B4J241 112 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 LOC107984640A0A0U1RRK4 108 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 M0R2N4 97 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 GEMIN2O14893 280 aaKnown RBP2.19□□□□□ -2.06
LIMA1-210ENST00000552045 TNFSF15O95150 251 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 SCGB1A1P11684 91 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 FABP4P15090 132 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 VMA21Q3ZAQ7 101 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 OR5AS1Q8N127 324 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 C10orf105Q8TEF2 133 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 HEATR1Q9H583 2144 aaKnown RBP2.19□□□□□ -2.06
LIMA1-210ENST00000552045 ORMDL1Q9P0S3 153 aa2.19□□□□□ -2.06
LIMA1-210ENST00000552045 TNRC6AQ8NDV7 1962 aaKnown RBP2.18□□□□□ -2.06
LIMA1-210ENST00000552045 TRBV27A0A0K0K1C4 114 aa2.18□□□□□ -2.06
LIMA1-210ENST00000552045 LOC105371267A0A1B0GV96 52 aa2.18□□□□□ -2.06
LIMA1-210ENST00000552045 TRBV6-4A0A1B0GX49 114 aa2.18□□□□□ -2.06
LIMA1-210ENST00000552045 INE1O15225 51 aa2.18□□□□□ -2.06
LIMA1-210ENST00000552045 CIRBPQ14011 172 aaKnown RBP2.18□□□□□ -2.06
LIMA1-210ENST00000552045 MPV17LQ2QL34 196 aa2.18□□□□□ -2.06
LIMA1-210ENST00000552045 CCL4L1Q8NHW4 92 aa2.18□□□□□ -2.06
LIMA1-210ENST00000552045 ZNF431Q8TF32 576 aaPredicted RBP2.18□□□□□ -2.06
LIMA1-210ENST00000552045 NIT2Q9NQR4 276 aa2.18□□□□□ -2.06
LIMA1-210ENST00000552045 TPRKBQ9Y3C4 175 aa2.18□□□□□ -2.06
LIMA1-210ENST00000552045 LAMA4Q16363 1823 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 KNTC1P50748 2209 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 MXRA5Q9NR99 2828 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 TRAV36DV7A0A075B6V5 113 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 H3BMG7 143 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 PSG9Q00887 426 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 OR8B8Q15620 311 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 OR4C12Q96R67 309 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 CBLN4Q9NTU7 201 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 NSD1Q96L73 2696 aaPredicted RBP2.17□□□□□ -2.06
LIMA1-210ENST00000552045 TACC2O95359 2948 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 PARP14Q460N5 1801 aa2.17□□□□□ -2.06
LIMA1-210ENST00000552045 TRBV6-7A0A0A0MS04 114 aa2.16□□□□□ -2.06
LIMA1-210ENST00000552045 A0A1B0GX51 115 aa2.16□□□□□ -2.06
LIMA1-210ENST00000552045 C9orf170A2RU37 121 aa2.16□□□□□ -2.06
LIMA1-210ENST00000552045 DEGS1O15121 323 aa2.16□□□□□ -2.06
LIMA1-210ENST00000552045 Q6ZSA8 131 aa2.16□□□□□ -2.06
LIMA1-210ENST00000552045 GKN2Q86XP6 184 aa2.16□□□□□ -2.06
LIMA1-210ENST00000552045 BORCS5Q969J3 196 aa2.16□□□□□ -2.06
LIMA1-210ENST00000552045 TCEAL4Q96EI5 215 aa2.16□□□□□ -2.06
LIMA1-210ENST00000552045 MCM3APO60318 1980 aa2.16□□□□□ -2.06
LIMA1-210ENST00000552045 VWFP04275 2813 aa2.15□□□□□ -2.06
LIMA1-210ENST00000552045 TENM1Q9UKZ4 2725 aa2.15□□□□□ -2.06
LIMA1-210ENST00000552045 PRRC2CQ9Y520 2896 aaKnown RBP2.15□□□□□ -2.07
LIMA1-210ENST00000552045 C5orf58C9J3I9 102 aa2.15□□□□□ -2.07
LIMA1-210ENST00000552045 LYNX1P0DP58 116 aa2.15□□□□□ -2.07
LIMA1-210ENST00000552045 SRP9P49458 86 aaKnown RBP2.15□□□□□ -2.07
LIMA1-210ENST00000552045 MAXP61244 160 aa2.15□□□□□ -2.07
LIMA1-210ENST00000552045 MORN4Q8NDC4 146 aa2.15□□□□□ -2.07
LIMA1-210ENST00000552045 PSMF1Q92530 271 aa2.15□□□□□ -2.07
LIMA1-210ENST00000552045 JPT1Q9UK76 154 aa2.15□□□□□ -2.07
LIMA1-210ENST00000552045 ZFP30Q9Y2G7 519 aa2.15□□□□□ -2.07
LIMA1-210ENST00000552045 ZFC3H1O60293 1989 aaKnown RBP2.15□□□□□ -2.07
LIMA1-210ENST00000552045 HERC2O95714 4834 aa2.15□□□□□ -2.07
LIMA1-210ENST00000552045 F8W1H4 67 aa2.14□□□□□ -2.07
LIMA1-210ENST00000552045 CCL25O15444 150 aa2.14□□□□□ -2.07
LIMA1-210ENST00000552045 DEFB109BQ30KR1 87 aa2.14□□□□□ -2.07
LIMA1-210ENST00000552045 TEN1Q86WV5 123 aa2.14□□□□□ -2.07
LIMA1-210ENST00000552045 OR8I2Q8N0Y5 310 aa2.14□□□□□ -2.07
LIMA1-210ENST00000552045 BRK1Q8WUW1 75 aa2.14□□□□□ -2.07
LIMA1-210ENST00000552045 OBSCN-AS1Q96MR7 158 aa2.14□□□□□ -2.07
LIMA1-210ENST00000552045 SPANXCQ9NY87 97 aa2.14□□□□□ -2.07
LIMA1-210ENST00000552045 ESPL1Q14674 2120 aa2.14□□□□□ -2.07
LIMA1-210ENST00000552045 M0QZK8 103 aa2.13□□□□□ -2.07
LIMA1-210ENST00000552045 NUPR1O60356 82 aa2.13□□□□□ -2.07
LIMA1-210ENST00000552045 FREM3P0C091 2139 aa2.13□□□□□ -2.07
LIMA1-210ENST00000552045 TPT1P13693 172 aaKnown RBP2.13□□□□□ -2.07
LIMA1-210ENST00000552045 COX7CP15954 63 aa2.13□□□□□ -2.07
LIMA1-210ENST00000552045 CRYGSP22914 178 aa2.13□□□□□ -2.07
LIMA1-210ENST00000552045 RPL22P35268 128 aaKnown RBP2.13□□□□□ -2.07
LIMA1-210ENST00000552045 FOXA3P55318 350 aaPredicted RBP2.13□□□□□ -2.07
LIMA1-210ENST00000552045 NAT14Q8WUY8 206 aa2.13□□□□□ -2.07
LIMA1-210ENST00000552045 MYH13Q9UKX3 1938 aa2.13□□□□□ -2.07
LIMA1-210ENST00000552045 SONP18583 2426 aaKnown RBP2.12□□□□□ -2.07
LIMA1-210ENST00000552045 ABCA4P78363 2273 aa2.12□□□□□ -2.07
LIMA1-210ENST00000552045 TANC2Q9HCD6 1990 aa2.12□□□□□ -2.07
LIMA1-210ENST00000552045 RYR2Q92736 4967 aa2.12□□□□□ -2.07
LIMA1-210ENST00000552045 ZNF25P17030 456 aaPredicted RBP2.12□□□□□ -2.07
LIMA1-210ENST00000552045 CCDC153Q494R4 210 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms