RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 SCN11AQ9UI33 1791 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 IGKV1D-42A0A075B6H8 117 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 IGLV3-16A0A075B6K0 115 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 A0A087WVE0 104 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 TRBV6-8A0A0A6YYG3 113 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV3-15A0A0B4J1V0 119 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 A8MUU9 505 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 PSCAO43653 123 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV1-46P01743 117 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 CLPSP04118 112 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 IFI6P09912 130 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV1-8P0DP01 117 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 IL9P15248 144 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 HMGA1P17096 107 aaKnown RBP1.35□□□□□ -2.19
LIMA1-207ENST00000551486 NUMA1Q14980 2115 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 NNATQ16517 81 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 HIGD2BQ4VC39 106 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 FAM27BQ5VT28 67 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 ZNF826PQ6ZT77 177 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 CLECL1Q8IZS7 167 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 LIMD2Q9BT23 127 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 ICOSQ9Y6W8 199 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 PIK3C2BO00750 1634 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 KIAA0556O60303 1618 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 THSD7BQ9C0I4 1608 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 ATP7BP35670 1465 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 KIAA1671Q9BY89 1806 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 TANC1Q9C0D5 1861 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 MYO5AQ9Y4I1 1855 aaKnown RBP1.35□□□□□ -2.19
LIMA1-207ENST00000551486 CPS1P31327 1500 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 TDRD6O60522 2096 aaKnown RBP1.35□□□□□ -2.19
LIMA1-207ENST00000551486 CDC42BPAQ5VT25 1732 aa1.35□□□□□ -2.19
LIMA1-207ENST00000551486 XRN1Q8IZH2 1706 aaKnown RBP1.35□□□□□ -2.19
LIMA1-207ENST00000551486 SAMD9Q5K651 1589 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 CFAP74Q9C0B2 1584 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 USP24Q9UPU5 2620 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 IGLV1-50A0A075B6I6 118 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 TRAV23DV6A0A075B6W5 121 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 TRAV12-3A0A0B4J271 114 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV1-3A0A0C4DH29 117 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 CXorf51AA0A1B0GTR3 108 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 SMIM27A0A1W2PRY6 76 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 A6NDX4 124 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 D6R8Y8 96 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 BPY2O14599 106 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 SPINK4O60575 86 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 INSP01308 110 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 IGHV3-33P01772 117 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 CISD3P0C7P0 127 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 ARMS2P0C7Q2 107 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 EIF4EBP1Q13541 118 aaPredicted RBP1.34□□□□□ -2.19
LIMA1-207ENST00000551486 DEFB113Q30KQ7 82 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 CSAG1Q6PB30 78 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 CASC2Q6XLA1 102 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 Q6ZR54 194 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 MUSTN1Q8IVN3 82 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 MIR7-3HGQ8N6C7 128 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 ZNF525Q8N782 197 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 Q8N9W7 124 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 FDCSPQ8NFU4 85 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 Q8TAT8 98 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 RPP21Q9H633 154 aaKnown RBP1.34□□□□□ -2.19
LIMA1-207ENST00000551486 CDC42SE2Q9NRR3 84 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 ZNF355PQ9NSJ1 428 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 TIMM9Q9Y5J7 89 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 KIF25-AS1Q9Y6Z4 181 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 MINOS1-NBL1R4GNA1 71 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 V9GYV3 84 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 PXDNQ92626 1479 aa1.34□□□□□ -2.19
LIMA1-207ENST00000551486 PPRC1Q5VV67 1664 aaKnown RBP1.34□□□□□ -2.19
LIMA1-207ENST00000551486 A0A0C4DFX4 3053 aa1.34□□□□□ -2.2
LIMA1-207ENST00000551486 GTF3C1Q12789 2109 aa1.34□□□□□ -2.2
LIMA1-207ENST00000551486 EXPH5Q8NEV8 1989 aa1.34□□□□□ -2.2
LIMA1-207ENST00000551486 LAMB4A4D0S4 1761 aa1.34□□□□□ -2.2
LIMA1-207ENST00000551486 CEP170Q5SW79 1584 aa1.34□□□□□ -2.2
LIMA1-207ENST00000551486 HEATR5AQ86XA9 2040 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 ADGBQ8N7X0 1667 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 GREB1Q4ZG55 1949 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 IGKV1D-37A0A075B6S9 117 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 IGKV1OR2-108A0A075B7D4 117 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 IGHV3OR16-8A0A075B7F1 116 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 TRBV30A0A0K0K1B3 111 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 C11orf86A6NJI1 115 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 H7C2G1 150 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 M0R3E3 92 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 ERC2-IT1O76042 136 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 WISP3O95389 354 aaPredicted RBP1.33□□□□□ -2.2
LIMA1-207ENST00000551486 MSMBP08118 114 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 COX6CP09669 75 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 FXYD6P3P58550 94 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 SERF2P84101 59 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 NTM-AS1Q6ZSK4 140 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 LYPD1Q8N2G4 141 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 C15orf56Q8N910 161 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 Q8NAQ8 132 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 MUC7Q8TAX7 377 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 C20orf166-AS1Q96NR2 134 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 LINC00467Q9BRT7 94 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 TIMM8BQ9Y5J9 83 aaPredicted RBP1.33□□□□□ -2.2
LIMA1-207ENST00000551486 FAM215AQ9Y5M1 114 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms