RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 RBMY1A1P0DJD3 496 aaKnown RBP7.04□□□□□ -1.28
PTCH1-220ENST00000550136 RBMY1CP0DJD4 496 aa7.04□□□□□ -1.28
PTCH1-220ENST00000550136 SAA4P35542 130 aa7.04□□□□□ -1.28
PTCH1-220ENST00000550136 DAZ2Q13117 558 aaKnown RBP7.04□□□□□ -1.28
PTCH1-220ENST00000550136 RBMY1FQ15415 496 aaKnown RBP7.04□□□□□ -1.28
PTCH1-220ENST00000550136 VKORC1L1Q8N0U8 176 aa7.04□□□□□ -1.28
PTCH1-220ENST00000550136 C14orf178Q8N769 122 aaPredicted RBP7.04□□□□□ -1.28
PTCH1-220ENST00000550136 FAM216BQ8N7L0 139 aa7.04□□□□□ -1.28
PTCH1-220ENST00000550136 DAZ3Q9NR90 486 aaKnown RBP7.04□□□□□ -1.28
PTCH1-220ENST00000550136 U3KQE9 123 aa7.04□□□□□ -1.28
PTCH1-220ENST00000550136 CSMD2Q7Z408 3487 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 IGKV3-11P04433 115 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 CCKP06307 115 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 FOXF2Q12947 444 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 C12orf77C9JDV5 145 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 EFNA2O43921 213 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 GP9P14770 177 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 LOXP28300 417 aaPredicted RBP7.03□□□□□ -1.28
PTCH1-220ENST00000550136 MAGEA5P43359 124 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 SPATA3Q8NHX4 192 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 CLEC2BQ92478 149 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 MRPL53Q96EL3 112 aaKnown RBP7.03□□□□□ -1.28
PTCH1-220ENST00000550136 PKDREJQ9NTG1 2253 aa7.03□□□□□ -1.28
PTCH1-220ENST00000550136 PAPPA-AS1Q5QFB9 102 aa7.02□□□□□ -1.29
PTCH1-220ENST00000550136 DYNAPQ8N1N2 210 aa7.02□□□□□ -1.29
PTCH1-220ENST00000550136 KLF14Q8TD94 323 aaPredicted RBP7.02□□□□□ -1.29
PTCH1-220ENST00000550136 FANCD2OSQ96PS1 177 aa7.02□□□□□ -1.29
PTCH1-220ENST00000550136 AMELXQ99217 191 aa7.02□□□□□ -1.29
PTCH1-220ENST00000550136 TRAV8-3A0A0A6YYJ7 113 aa7.02□□□□□ -1.29
PTCH1-220ENST00000550136 INAFM2P0DMQ5 153 aa7.02□□□□□ -1.29
PTCH1-220ENST00000550136 UBE2E1P51965 193 aa7.02□□□□□ -1.29
PTCH1-220ENST00000550136 MUSTN1Q8IVN3 82 aa7.02□□□□□ -1.29
PTCH1-220ENST00000550136 C20orf197Q8N268 126 aa7.02□□□□□ -1.29
PTCH1-220ENST00000550136 SCGB3A1Q96QR1 104 aa7.02□□□□□ -1.29
PTCH1-220ENST00000550136 INTS1Q8N201 2190 aaKnown RBP7.01□□□□□ -1.29
PTCH1-220ENST00000550136 TOMM6Q96B49 74 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 ZNF407Q9C0G0 2248 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 FER1L5A0AVI2 2057 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 IGHV3OR16-10A0A075B7F0 116 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 A0A087WVE0 104 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 TMEM30CPA0ZSE6 113 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 TEX22C9J3V5 150 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 ATP5EP56381 51 aaPredicted RBP7.01□□□□□ -1.29
PTCH1-220ENST00000550136 TSPEAR-AS2P59090 65 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 PRCDQ00LT1 54 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 MLANAQ16655 118 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 ZNF491Q8N8L2 437 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 C11orf45Q8TAV5 145 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 VSIG2Q96IQ7 327 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 CNFNQ9BYD5 112 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 MOB4Q9Y3A3 225 aa7.01□□□□□ -1.29
PTCH1-220ENST00000550136 DCHS2Q6V1P9 2916 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 A0A1W2PNR3 127 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 NGFP01138 241 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 ZNF32P17041 273 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 UBE2D4Q9Y2X8 147 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 DOCK7Q96N67 2140 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 RTTNQ86VV8 2226 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 GHRHP01286 108 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 GATA1P15976 413 aaPredicted RBP7□□□□□ -1.29
PTCH1-220ENST00000550136 DGAT2L7PQ6IED9 249 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 MDFIQ99750 246 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 CXXC4Q9H2H0 198 aa7□□□□□ -1.29
PTCH1-220ENST00000550136 M0R3E3 92 aa6.99□□□□□ -1.29
PTCH1-220ENST00000550136 THAP8Q8NA92 274 aa6.99□□□□□ -1.29
PTCH1-220ENST00000550136 TRBV19A0A075B6N1 114 aa6.98□□□□□ -1.29
PTCH1-220ENST00000550136 IGKV3D-7A0A0C4DH55 119 aa6.98□□□□□ -1.29
PTCH1-220ENST00000550136 SH2D1AO60880 128 aa6.98□□□□□ -1.29
PTCH1-220ENST00000550136 PROP1O75360 226 aa6.98□□□□□ -1.29
PTCH1-220ENST00000550136 RBM3P98179 157 aaKnown RBP6.98□□□□□ -1.29
PTCH1-220ENST00000550136 IGKV1D-37A0A075B6S9 117 aa6.98□□□□□ -1.29
PTCH1-220ENST00000550136 LGALS3P17931 250 aaKnown RBP6.98□□□□□ -1.29
PTCH1-220ENST00000550136 KLKP1Q107X0 134 aa6.98□□□□□ -1.29
PTCH1-220ENST00000550136 UBE2E2Q96LR5 201 aa6.98□□□□□ -1.29
PTCH1-220ENST00000550136 C11orf86A6NJI1 115 aa6.97□□□□□ -1.29
PTCH1-220ENST00000550136 C19orf84I3L1E1 186 aa6.97□□□□□ -1.29
PTCH1-220ENST00000550136 I3L3M4 83 aa6.97□□□□□ -1.29
PTCH1-220ENST00000550136 Q8IYB0 196 aa6.97□□□□□ -1.29
PTCH1-220ENST00000550136 RBM12B-AS1Q9P1G2 102 aa6.97□□□□□ -1.29
PTCH1-220ENST00000550136 ZGRF1Q86YA3 2104 aa6.97□□□□□ -1.29
PTCH1-220ENST00000550136 IGLV4-69A0A075B6H9 119 aa6.97□□□□□ -1.29
PTCH1-220ENST00000550136 CD40P25942 277 aa6.97□□□□□ -1.29
PTCH1-220ENST00000550136 DEFB110Q30KQ9 67 aa6.97□□□□□ -1.29
PTCH1-220ENST00000550136 FAM222AQ5U5X8 452 aa6.97□□□□□ -1.29
PTCH1-220ENST00000550136 E7EUB6 86 aa6.96□□□□□ -1.29
PTCH1-220ENST00000550136 J3QT63 122 aa6.96□□□□□ -1.29
PTCH1-220ENST00000550136 MSRB1Q9NZV6 116 aa6.96□□□□□ -1.29
PTCH1-220ENST00000550136 TMEM14CQ9P0S9 112 aa6.96□□□□□ -1.29
PTCH1-220ENST00000550136 A0A0J9YX75 114 aa6.96□□□□□ -1.3
PTCH1-220ENST00000550136 SPRY3O43610 288 aa6.96□□□□□ -1.3
PTCH1-220ENST00000550136 SUB1P53999 127 aaKnown RBP eCLIP6.96□□□□□ -1.3
PTCH1-220ENST00000550136 RUSC1-AS1Q66K80 236 aa6.96□□□□□ -1.3
PTCH1-220ENST00000550136 C8orf49Q96NF6 230 aa6.96□□□□□ -1.3
PTCH1-220ENST00000550136 IGHV1-58A0A0C4DH39 117 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 SDHAF1A6NFY7 115 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 H3BS24 57 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 PATE4P0C8F1 98 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 Q0VFX4 171 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 PLGLAQ15195 96 aa6.95□□□□□ -1.3
PTCH1-220ENST00000550136 COX8CQ7Z4L0 72 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms