RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 GTSF1LQ9H1H1 148 aa12.34□□□□□ -0.43
CUX1-213ENST00000549414 RAI1Q7Z5J4 1906 aaPredicted RBP12.34□□□□□ -0.43
CUX1-213ENST00000549414 IGHG4P01861 327 aa12.34□□□□□ -0.43
CUX1-213ENST00000549414 PFN2P35080 140 aa12.34□□□□□ -0.43
CUX1-213ENST00000549414 OCIAD2Q56VL3 154 aa12.34□□□□□ -0.43
CUX1-213ENST00000549414 RBMY1BA6NDE4 496 aaKnown RBP12.33□□□□□ -0.43
CUX1-213ENST00000549414 RBMY1EA6NEQ0 496 aaKnown RBP12.33□□□□□ -0.43
CUX1-213ENST00000549414 RBMY1DP0C7P1 496 aaKnown RBP12.33□□□□□ -0.43
CUX1-213ENST00000549414 RBMY1A1P0DJD3 496 aaKnown RBP12.33□□□□□ -0.43
CUX1-213ENST00000549414 RBMY1CP0DJD4 496 aa12.33□□□□□ -0.43
CUX1-213ENST00000549414 CLPSL2Q6UWE3 100 aa12.33□□□□□ -0.43
CUX1-213ENST00000549414 TMEM243Q9BU79 118 aa12.33□□□□□ -0.43
CUX1-213ENST00000549414 PIFOQ8TCI5 191 aa12.33□□□□□ -0.44
CUX1-213ENST00000549414 TRAV8-3A0A0A6YYJ7 113 aa12.33□□□□□ -0.44
CUX1-213ENST00000549414 A0A1W2PPM0 123 aa12.33□□□□□ -0.44
CUX1-213ENST00000549414 CCL25O15444 150 aa12.33□□□□□ -0.44
CUX1-213ENST00000549414 LAMA1P25391 3075 aa12.33□□□□□ -0.44
CUX1-213ENST00000549414 TSPAN13O95857 204 aa12.33□□□□□ -0.44
CUX1-213ENST00000549414 APOC4P55056 127 aa12.33□□□□□ -0.44
CUX1-213ENST00000549414 TMEM86BQ8N661 226 aa12.33□□□□□ -0.44
CUX1-213ENST00000549414 PCSK5Q92824 1860 aa12.32□□□□□ -0.44
CUX1-213ENST00000549414 ODF1Q14990 250 aa12.32□□□□□ -0.44
CUX1-213ENST00000549414 SCGB1A1P11684 91 aa12.32□□□□□ -0.44
CUX1-213ENST00000549414 C12orf74Q32Q52 190 aa12.31□□□□□ -0.44
CUX1-213ENST00000549414 OPRPNQ99935 248 aaPredicted RBP12.31□□□□□ -0.44
CUX1-213ENST00000549414 VCANP13611 3396 aa12.31□□□□□ -0.44
CUX1-213ENST00000549414 DEFB4AO15263 64 aa12.31□□□□□ -0.44
CUX1-213ENST00000549414 FXYD2P54710 66 aa12.31□□□□□ -0.44
CUX1-213ENST00000549414 K7EP13 123 aa12.31□□□□□ -0.44
CUX1-213ENST00000549414 AVPP01185 164 aa12.31□□□□□ -0.44
CUX1-213ENST00000549414 DNAH14Q0VDD8 3507 aa12.31□□□□□ -0.44
CUX1-213ENST00000549414 SIGMAR1Q99720 223 aa12.31□□□□□ -0.44
CUX1-213ENST00000549414 DNAJC9-AS1A6NH13 148 aa12.3□□□□□ -0.44
CUX1-213ENST00000549414 K7EP34 96 aa12.3□□□□□ -0.44
CUX1-213ENST00000549414 C2orf82Q6UX34 121 aa12.3□□□□□ -0.44
CUX1-213ENST00000549414 Q6ZQT7 251 aa12.3□□□□□ -0.44
CUX1-213ENST00000549414 IGHV4-31P0DP07 118 aa12.3□□□□□ -0.44
CUX1-213ENST00000549414 RHOHQ15669 191 aa12.3□□□□□ -0.44
CUX1-213ENST00000549414 SIVA1O15304 175 aa12.29□□□□□ -0.44
CUX1-213ENST00000549414 LINC00310P59036 64 aa12.29□□□□□ -0.44
CUX1-213ENST00000549414 ATXN8Q156A1 80 aa12.29□□□□□ -0.44
CUX1-213ENST00000549414 C11orf21Q9P2W6 132 aa12.29□□□□□ -0.44
CUX1-213ENST00000549414 FGF6P10767 208 aa12.28□□□□□ -0.44
CUX1-213ENST00000549414 BAALCQ8WXS3 180 aa12.28□□□□□ -0.44
CUX1-213ENST00000549414 GAS8-AS1O95177 125 aa12.28□□□□□ -0.44
CUX1-213ENST00000549414 P0DMU3 169 aa12.28□□□□□ -0.44
CUX1-213ENST00000549414 FAM231AP0DMU4 169 aa12.28□□□□□ -0.44
CUX1-213ENST00000549414 FAM231CP0DMU5 169 aa12.28□□□□□ -0.44
CUX1-213ENST00000549414 ZFAND2AQ8N6M9 145 aa12.28□□□□□ -0.44
CUX1-213ENST00000549414 SS18Q15532 418 aa12.28□□□□□ -0.44
CUX1-213ENST00000549414 NXPH4O95158 308 aa12.27□□□□□ -0.44
CUX1-213ENST00000549414 S100A7L2Q5SY68 101 aa12.27□□□□□ -0.44
CUX1-213ENST00000549414 PRO1854Q9UHT4 67 aa12.27□□□□□ -0.45
CUX1-213ENST00000549414 CLPSL1A2RUU4 121 aa12.27□□□□□ -0.45
CUX1-213ENST00000549414 C11orf86A6NJI1 115 aa12.27□□□□□ -0.45
CUX1-213ENST00000549414 LEPROTO15243 131 aa12.27□□□□□ -0.45
CUX1-213ENST00000549414 KRTAP10-9P60411 292 aa12.27□□□□□ -0.45
CUX1-213ENST00000549414 PRR9Q5T870 116 aa12.27□□□□□ -0.45
CUX1-213ENST00000549414 CEMP1Q6PRD7 247 aaPredicted RBP12.27□□□□□ -0.45
CUX1-213ENST00000549414 BOD1L2Q8IYS8 172 aa12.26□□□□□ -0.45
CUX1-213ENST00000549414 TAX1BP3O14907 124 aa12.25□□□□□ -0.45
CUX1-213ENST00000549414 ZMAT4Q9H898 229 aa12.25□□□□□ -0.45
CUX1-213ENST00000549414 K7EQG2 157 aa12.25□□□□□ -0.45
CUX1-213ENST00000549414 DEFB135Q30KP9 77 aa12.25□□□□□ -0.45
CUX1-213ENST00000549414 TRAV8-4A0A0B4J246 113 aa12.25□□□□□ -0.45
CUX1-213ENST00000549414 CELSR3Q9NYQ7 3312 aa12.24□□□□□ -0.45
CUX1-213ENST00000549414 ANGP03950 147 aaKnown RBP12.24□□□□□ -0.45
CUX1-213ENST00000549414 Q6YL49 198 aa12.24□□□□□ -0.45
CUX1-213ENST00000549414 TOMM6Q96B49 74 aa12.24□□□□□ -0.45
CUX1-213ENST00000549414 TMEM89A2RUT3 159 aa12.24□□□□□ -0.45
CUX1-213ENST00000549414 C9orf66Q5T8R8 295 aa12.24□□□□□ -0.45
CUX1-213ENST00000549414 C10orf126Q8N4M7 172 aa12.24□□□□□ -0.45
CUX1-213ENST00000549414 TAL2Q16559 108 aa12.24□□□□□ -0.45
CUX1-213ENST00000549414 EDN2P20800 178 aa12.23□□□□□ -0.45
CUX1-213ENST00000549414 MAP6D1Q9H9H5 199 aa12.23□□□□□ -0.45
CUX1-213ENST00000549414 RNF185Q96GF1 192 aa12.23□□□□□ -0.45
CUX1-213ENST00000549414 Q9H8V8 135 aa12.23□□□□□ -0.45
CUX1-213ENST00000549414 C5orf38Q86SI9 138 aa12.23□□□□□ -0.45
CUX1-213ENST00000549414 XCL1P47992 114 aa12.22□□□□□ -0.45
CUX1-213ENST00000549414 SPATA12Q7Z6I5 190 aa12.22□□□□□ -0.45
CUX1-213ENST00000549414 C4orf3Q8WVX3 66 aa12.22□□□□□ -0.45
CUX1-213ENST00000549414 Q9HAA7 133 aa12.22□□□□□ -0.45
CUX1-213ENST00000549414 F8W735 103 aaPredicted RBP12.22□□□□□ -0.45
CUX1-213ENST00000549414 MRGPRG-AS1Q2M3A8 158 aa12.22□□□□□ -0.45
CUX1-213ENST00000549414 C18orf65Q6ZTR6 163 aa12.22□□□□□ -0.45
CUX1-213ENST00000549414 PRM2P04554 102 aa12.22□□□□□ -0.45
CUX1-213ENST00000549414 MED14OSP0DP75 135 aa12.22□□□□□ -0.45
CUX1-213ENST00000549414 DAND5Q8N907 189 aa12.21□□□□□ -0.45
CUX1-213ENST00000549414 HERVK_113P63121 156 aa12.21□□□□□ -0.45
CUX1-213ENST00000549414 SLC25A20O43772 301 aa12.21□□□□□ -0.46
CUX1-213ENST00000549414 MRPS12O15235 138 aaKnown RBP12.21□□□□□ -0.46
CUX1-213ENST00000549414 SMR3AQ99954 134 aa12.21□□□□□ -0.46
CUX1-213ENST00000549414 IGLL5B9A064 214 aa12.2□□□□□ -0.46
CUX1-213ENST00000549414 SH2D6Q7Z4S9 175 aa12.2□□□□□ -0.46
CUX1-213ENST00000549414 ZNF561-AS1K7EIQ3 104 aa12.19□□□□□ -0.46
CUX1-213ENST00000549414 PSMB8P28062 276 aa12.19□□□□□ -0.46
CUX1-213ENST00000549414 IGKV2D-26A0A0A0MRZ7 120 aa12.19□□□□□ -0.46
CUX1-213ENST00000549414 A4D1N5 150 aa12.19□□□□□ -0.46
CUX1-213ENST00000549414 H3BMM0 161 aa12.19□□□□□ -0.46
CUX1-213ENST00000549414 ZNF292O60281 2723 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms