RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 IGHV4OR15-8A0A075B7B6 117 aa11.15□□□□□ -0.62
USP28-214ENST00000545540 A0A087WW49 117 aa11.15□□□□□ -0.62
USP28-214ENST00000545540 POLR2KP53803 58 aaKnown RBP11.15□□□□□ -0.62
USP28-214ENST00000545540 C11orf44Q8N8P7 122 aa11.15□□□□□ -0.62
USP28-214ENST00000545540 PRORYQ9H606 182 aa11.15□□□□□ -0.62
USP28-214ENST00000545540 CRIP2P52943 208 aaPredicted RBP11.15□□□□□ -0.63
USP28-214ENST00000545540 IGHV3-16A0A0C4DH30 117 aa11.14□□□□□ -0.63
USP28-214ENST00000545540 TMEM238C9JI98 176 aa11.14□□□□□ -0.63
USP28-214ENST00000545540 AZU1P20160 251 aa11.14□□□□□ -0.63
USP28-214ENST00000545540 PSMB8P28062 276 aa11.14□□□□□ -0.63
USP28-214ENST00000545540 VCYO14598 125 aa11.13□□□□□ -0.63
USP28-214ENST00000545540 NPC2P61916 151 aa11.13□□□□□ -0.63
USP28-214ENST00000545540 PMVKQ15126 192 aa11.13□□□□□ -0.63
USP28-214ENST00000545540 A8MZ25 164 aa11.13□□□□□ -0.63
USP28-214ENST00000545540 RBMY1A1P0DJD3 496 aaKnown RBP11.13□□□□□ -0.63
USP28-214ENST00000545540 RBMY1CP0DJD4 496 aa11.13□□□□□ -0.63
USP28-214ENST00000545540 COX6B1P14854 86 aa11.13□□□□□ -0.63
USP28-214ENST00000545540 SLURP1P55000 103 aa11.13□□□□□ -0.63
USP28-214ENST00000545540 RBMY1FQ15415 496 aaKnown RBP11.13□□□□□ -0.63
USP28-214ENST00000545540 A0A0J9YXV3 536 aa11.13□□□□□ -0.63
USP28-214ENST00000545540 B4DSR2 109 aa11.13□□□□□ -0.63
USP28-214ENST00000545540 A0A0J9YX75 114 aa11.12□□□□□ -0.63
USP28-214ENST00000545540 FLNAP21333 2647 aaKnown RBP11.12□□□□□ -0.63
USP28-214ENST00000545540 IGHV3-38A0A0C4DH36 116 aa11.12□□□□□ -0.63
USP28-214ENST00000545540 TSPAN13O95857 204 aa11.12□□□□□ -0.63
USP28-214ENST00000545540 SNRPD3P62318 126 aaKnown RBP11.12□□□□□ -0.63
USP28-214ENST00000545540 A0A0J9YY99 117 aa11.12□□□□□ -0.63
USP28-214ENST00000545540 M0QY20 66 aa11.12□□□□□ -0.63
USP28-214ENST00000545540 CFHR3Q02985 330 aa11.12□□□□□ -0.63
USP28-214ENST00000545540 SPXQ9BT56 116 aa11.12□□□□□ -0.63
USP28-214ENST00000545540 NOTCH2Q04721 2471 aa11.12□□□□□ -0.63
USP28-214ENST00000545540 NBEAL2Q6ZNJ1 2754 aa11.11□□□□□ -0.63
USP28-214ENST00000545540 TRAV2A0A0B4J234 112 aa11.11□□□□□ -0.63
USP28-214ENST00000545540 HOXD3P31249 432 aaPredicted RBP11.11□□□□□ -0.63
USP28-214ENST00000545540 APCP25054 2843 aa11.11□□□□□ -0.63
USP28-214ENST00000545540 DEFB131AP59861 70 aa11.1□□□□□ -0.63
USP28-214ENST00000545540 IGHV1OR15-1A0A075B7D0 117 aa11.1□□□□□ -0.63
USP28-214ENST00000545540 SMCPP49901 116 aaPredicted RBP11.1□□□□□ -0.63
USP28-214ENST00000545540 APRG1Q8IVJ8 170 aa11.1□□□□□ -0.63
USP28-214ENST00000545540 ITPR3Q14573 2671 aa11.1□□□□□ -0.63
USP28-214ENST00000545540 SCGB1C2P0DMR2 95 aa11.1□□□□□ -0.63
USP28-214ENST00000545540 TAL2Q16559 108 aa11.1□□□□□ -0.63
USP28-214ENST00000545540 IGHV3OR16-12A0A075B7B8 117 aa11.09□□□□□ -0.63
USP28-214ENST00000545540 GAGE12HA6NDE8 117 aa11.09□□□□□ -0.63
USP28-214ENST00000545540 SETXQ7Z333 2677 aaKnown RBP11.09□□□□□ -0.63
USP28-214ENST00000545540 TRAV8-3A0A0A6YYJ7 113 aa11.09□□□□□ -0.63
USP28-214ENST00000545540 F8W1H4 67 aa11.09□□□□□ -0.63
USP28-214ENST00000545540 TCTEX1D4Q5JR98 221 aa11.09□□□□□ -0.63
USP28-214ENST00000545540 J3QQQ9 107 aa11.09□□□□□ -0.63
USP28-214ENST00000545540 SAMD13Q5VXD3 122 aa11.09□□□□□ -0.63
USP28-214ENST00000545540 PRO0461Q9UI25 63 aa11.09□□□□□ -0.63
USP28-214ENST00000545540 CFC1BP0CG36 223 aa11.08□□□□□ -0.64
USP28-214ENST00000545540 CFC1P0CG37 223 aa11.08□□□□□ -0.64
USP28-214ENST00000545540 KRTAP10-9P60411 292 aa11.08□□□□□ -0.64
USP28-214ENST00000545540 K7EQG2 157 aa11.08□□□□□ -0.64
USP28-214ENST00000545540 LGALS3P17931 250 aaKnown RBP11.08□□□□□ -0.64
USP28-214ENST00000545540 Q6ZSN1 163 aa11.08□□□□□ -0.64
USP28-214ENST00000545540 NFE4Q86UQ8 179 aa11.08□□□□□ -0.64
USP28-214ENST00000545540 H3BUA1 57 aa11.07□□□□□ -0.64
USP28-214ENST00000545540 HERVK_113P61574 105 aa11.07□□□□□ -0.64
USP28-214ENST00000545540 NXPH4O95158 308 aa11.07□□□□□ -0.64
USP28-214ENST00000545540 PRSS2P07478 247 aa11.07□□□□□ -0.64
USP28-214ENST00000545540 NDUFA11Q86Y39 141 aa11.07□□□□□ -0.64
USP28-214ENST00000545540 ATP6V0BQ99437 205 aa11.07□□□□□ -0.64
USP28-214ENST00000545540 TRBV27A0A0K0K1C4 114 aa11.06□□□□□ -0.64
USP28-214ENST00000545540 TCL1BO95988 128 aa11.06□□□□□ -0.64
USP28-214ENST00000545540 PPP1R17O96001 155 aa11.06□□□□□ -0.64
USP28-214ENST00000545540 Q6ZSV7 163 aa11.06□□□□□ -0.64
USP28-214ENST00000545540 C9orf85Q96MD7 179 aa11.06□□□□□ -0.64
USP28-214ENST00000545540 MED14OSP0DP75 135 aa11.06□□□□□ -0.64
USP28-214ENST00000545540 TRPT1Q86TN4 253 aaKnown RBP11.06□□□□□ -0.64
USP28-214ENST00000545540 A4D1N5 150 aa11.06□□□□□ -0.64
USP28-214ENST00000545540 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.05□□□□□ -0.64
USP28-214ENST00000545540 IGKV2-29A2NJV5 120 aaPredicted RBP11.05□□□□□ -0.64
USP28-214ENST00000545540 K7EMT4 169 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 LGALS9O00182 355 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 SIGMAR1Q99720 223 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 VCX2Q9H322 139 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 IGHV3-30P01768 117 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 IGHV3-30-5P0DP03 117 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 UBE2D1P51668 147 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 SYT8Q8NBV8 401 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 A0A0U1RRA0 63 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 A0A1W2PRX2 142 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 NDUFS8O00217 210 aa11.05□□□□□ -0.64
USP28-214ENST00000545540 EIF4EBP3O60516 100 aaPredicted RBP11.05□□□□□ -0.64
USP28-214ENST00000545540 TMEM238LA0A1B0GVL6 79 aa11.04□□□□□ -0.64
USP28-214ENST00000545540 A6NJY4 79 aa11.04□□□□□ -0.64
USP28-214ENST00000545540 DAND5Q8N907 189 aa11.04□□□□□ -0.64
USP28-214ENST00000545540 DLX4Q92988 240 aaPredicted RBP11.04□□□□□ -0.64
USP28-214ENST00000545540 MUSTN1Q8IVN3 82 aa11.03□□□□□ -0.64
USP28-214ENST00000545540 AMELXQ99217 191 aa11.03□□□□□ -0.64
USP28-214ENST00000545540 RBMY1BA6NDE4 496 aaKnown RBP11.03□□□□□ -0.64
USP28-214ENST00000545540 RBMY1EA6NEQ0 496 aaKnown RBP11.03□□□□□ -0.64
USP28-214ENST00000545540 ELANEP08246 267 aa11.03□□□□□ -0.64
USP28-214ENST00000545540 RBMY1DP0C7P1 496 aaKnown RBP11.03□□□□□ -0.64
USP28-214ENST00000545540 CD28P10747 220 aa11.03□□□□□ -0.64
USP28-214ENST00000545540 C20orf203Q8NBC4 194 aa11.03□□□□□ -0.64
USP28-214ENST00000545540 IGLV4-3A0A075B6K6 122 aa11.03□□□□□ -0.64
USP28-214ENST00000545540 ZNF22P17026 224 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms