RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 DEFB121Q5J5C9 76 aa10.91□□□□□ -0.66
LIMS1-215ENST00000544547 A0A0J9YY99 117 aa10.91□□□□□ -0.66
LIMS1-215ENST00000544547 TRBV10-2A0A0K0K1G8 114 aa10.91□□□□□ -0.66
LIMS1-215ENST00000544547 FANCD2OSQ96PS1 177 aa10.91□□□□□ -0.66
LIMS1-215ENST00000544547 ICOSQ9Y6W8 199 aa10.91□□□□□ -0.66
LIMS1-215ENST00000544547 TNRC6BQ9UPQ9 1833 aaKnown RBP10.9□□□□□ -0.66
LIMS1-215ENST00000544547 IGLV1-47P01700 117 aa10.9□□□□□ -0.66
LIMS1-215ENST00000544547 RASL10AQ92737 203 aa10.9□□□□□ -0.66
LIMS1-215ENST00000544547 USP9XQ93008 2570 aaPredicted RBP10.9□□□□□ -0.66
LIMS1-215ENST00000544547 NEXN-AS1Q8NBZ9 246 aa10.9□□□□□ -0.66
LIMS1-215ENST00000544547 C8orf31Q8N9H6 132 aa10.9□□□□□ -0.67
LIMS1-215ENST00000544547 IGF1P05019 195 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 SUMO4Q6EEV6 95 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 PIFOQ8TCI5 191 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 IGHV3-16A0A0C4DH30 117 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 IGHG4P01861 327 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 Q6ZS46 218 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 PIP4P1Q86T03 277 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 KAAG1Q9UBP8 84 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 I3L3M4 83 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 LEPROTO15243 131 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 TRACP01848 142 aa10.89□□□□□ -0.67
LIMS1-215ENST00000544547 CHD8Q9HCK8 2581 aa10.88□□□□□ -0.67
LIMS1-215ENST00000544547 HOXD3P31249 432 aaPredicted RBP10.88□□□□□ -0.67
LIMS1-215ENST00000544547 FRYQ5TBA9 3013 aa10.88□□□□□ -0.67
LIMS1-215ENST00000544547 CDIP1Q9H305 208 aa10.88□□□□□ -0.67
LIMS1-215ENST00000544547 BAALC-AS2P0C853 105 aa10.87□□□□□ -0.67
LIMS1-215ENST00000544547 Q6ZQT7 251 aa10.87□□□□□ -0.67
LIMS1-215ENST00000544547 TINCRA0A1B0GVN0 87 aa10.87□□□□□ -0.67
LIMS1-215ENST00000544547 SHISA2Q6UWI4 295 aa10.87□□□□□ -0.67
LIMS1-215ENST00000544547 MRPS12O15235 138 aaKnown RBP10.86□□□□□ -0.67
LIMS1-215ENST00000544547 CRIP2P52943 208 aaPredicted RBP10.86□□□□□ -0.67
LIMS1-215ENST00000544547 LINC00574Q9H8X3 128 aa10.86□□□□□ -0.67
LIMS1-215ENST00000544547 IGKV3D-7A0A0C4DH55 119 aa10.86□□□□□ -0.67
LIMS1-215ENST00000544547 FSTL3O95633 263 aa10.86□□□□□ -0.67
LIMS1-215ENST00000544547 SLC25A29Q8N8R3 303 aa10.86□□□□□ -0.67
LIMS1-215ENST00000544547 C11orf21Q9P2W6 132 aa10.86□□□□□ -0.67
LIMS1-215ENST00000544547 TMEM126AQ9H061 195 aa10.86□□□□□ -0.67
LIMS1-215ENST00000544547 PTPRBP23467 1997 aa10.86□□□□□ -0.67
LIMS1-215ENST00000544547 INAFM2P0DMQ5 153 aa10.86□□□□□ -0.67
LIMS1-215ENST00000544547 Q96MF0 132 aa10.86□□□□□ -0.67
LIMS1-215ENST00000544547 USP9YO00507 2555 aaPredicted RBP10.85□□□□□ -0.67
LIMS1-215ENST00000544547 IGHV7-81A0A0B4J1V7 117 aa10.85□□□□□ -0.67
LIMS1-215ENST00000544547 RHODO00212 210 aa10.85□□□□□ -0.67
LIMS1-215ENST00000544547 CFHR3Q02985 330 aa10.85□□□□□ -0.67
LIMS1-215ENST00000544547 SPTBN5Q9NRC6 3674 aaKnown RBP10.85□□□□□ -0.67
LIMS1-215ENST00000544547 DSPP15924 2871 aaKnown RBP10.85□□□□□ -0.67
LIMS1-215ENST00000544547 IGHV3-33P01772 117 aa10.84□□□□□ -0.67
LIMS1-215ENST00000544547 NRACQ8N912 160 aa10.84□□□□□ -0.67
LIMS1-215ENST00000544547 ABCA12Q86UK0 2595 aa10.84□□□□□ -0.67
LIMS1-215ENST00000544547 NDUFA4O00483 81 aa10.84□□□□□ -0.67
LIMS1-215ENST00000544547 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.84□□□□□ -0.67
LIMS1-215ENST00000544547 IGKV2-29A2NJV5 120 aaPredicted RBP10.84□□□□□ -0.67
LIMS1-215ENST00000544547 ADAMTS20P59510 1910 aa10.83□□□□□ -0.68
LIMS1-215ENST00000544547 IGHV1OR15-1A0A075B7D0 117 aa10.83□□□□□ -0.68
LIMS1-215ENST00000544547 CEMP1Q6PRD7 247 aaPredicted RBP10.83□□□□□ -0.68
LIMS1-215ENST00000544547 UBE2DNLQ8IWF7 75 aa10.83□□□□□ -0.68
LIMS1-215ENST00000544547 SMAD5-AS1Q9Y6J3 95 aa10.83□□□□□ -0.68
LIMS1-215ENST00000544547 LGALS9O00182 355 aa10.83□□□□□ -0.68
LIMS1-215ENST00000544547 LINC01619G3V211 115 aa10.82□□□□□ -0.68
LIMS1-215ENST00000544547 TRIAP1O43715 76 aa10.82□□□□□ -0.68
LIMS1-215ENST00000544547 Q9H8V8 135 aa10.82□□□□□ -0.68
LIMS1-215ENST00000544547 A0A1B0GX51 115 aa10.82□□□□□ -0.68
LIMS1-215ENST00000544547 CRLF1O75462 422 aa10.82□□□□□ -0.68
LIMS1-215ENST00000544547 ZMAT4Q9H898 229 aa10.82□□□□□ -0.68
LIMS1-215ENST00000544547 LAMTOR3Q9UHA4 124 aa10.82□□□□□ -0.68
LIMS1-215ENST00000544547 IGHV3-30P01768 117 aa10.82□□□□□ -0.68
LIMS1-215ENST00000544547 IGHV3-30-5P0DP03 117 aa10.82□□□□□ -0.68
LIMS1-215ENST00000544547 PRO3102Q9H379 93 aa10.82□□□□□ -0.68
LIMS1-215ENST00000544547 NBL1P41271 181 aa10.81□□□□□ -0.68
LIMS1-215ENST00000544547 FREM2Q5SZK8 3169 aa10.81□□□□□ -0.68
LIMS1-215ENST00000544547 J3KT08 172 aa10.81□□□□□ -0.68
LIMS1-215ENST00000544547 IGHV3-30-3P0DP02 117 aa10.81□□□□□ -0.68
LIMS1-215ENST00000544547 H3BT86 120 aa10.81□□□□□ -0.68
LIMS1-215ENST00000544547 PFN2P35080 140 aa10.81□□□□□ -0.68
LIMS1-215ENST00000544547 SS18Q15532 418 aa10.81□□□□□ -0.68
LIMS1-215ENST00000544547 C9orf47Q6ZRZ4 202 aa10.8□□□□□ -0.68
LIMS1-215ENST00000544547 LINC01548A6NM66 108 aa10.8□□□□□ -0.68
LIMS1-215ENST00000544547 F5H768 121 aa10.8□□□□□ -0.68
LIMS1-215ENST00000544547 COL4A2P08572 1712 aa10.8□□□□□ -0.68
LIMS1-215ENST00000544547 TIMM17AQ99595 171 aa10.8□□□□□ -0.68
LIMS1-215ENST00000544547 ZNRF2Q8NHG8 242 aa10.8□□□□□ -0.68
LIMS1-215ENST00000544547 SMCPP49901 116 aaPredicted RBP10.8□□□□□ -0.68
LIMS1-215ENST00000544547 CRYGBP07316 175 aa10.79□□□□□ -0.68
LIMS1-215ENST00000544547 FN1P02751 2386 aaKnown RBP10.79□□□□□ -0.68
LIMS1-215ENST00000544547 A0A0J9YXY3 114 aa10.79□□□□□ -0.68
LIMS1-215ENST00000544547 NPBQ8NG41 125 aa10.79□□□□□ -0.68
LIMS1-215ENST00000544547 LENEPQ9Y5L5 61 aa10.79□□□□□ -0.68
LIMS1-215ENST00000544547 UBE2D1P51668 147 aa10.78□□□□□ -0.68
LIMS1-215ENST00000544547 AJUBAQ96IF1 538 aa10.78□□□□□ -0.68
LIMS1-215ENST00000544547 SOCS3O14543 225 aa10.78□□□□□ -0.68
LIMS1-215ENST00000544547 M0QXV9 152 aa10.78□□□□□ -0.68
LIMS1-215ENST00000544547 PSCAO43653 123 aa10.78□□□□□ -0.68
LIMS1-215ENST00000544547 RHOHQ15669 191 aa10.78□□□□□ -0.68
LIMS1-215ENST00000544547 SRSF2Q01130 221 aaKnown RBP10.78□□□□□ -0.68
LIMS1-215ENST00000544547 ACYP1P07311 99 aa10.77□□□□□ -0.68
LIMS1-215ENST00000544547 DAD1P61803 113 aa10.77□□□□□ -0.68
LIMS1-215ENST00000544547 MRPL53Q96EL3 112 aaKnown RBP10.77□□□□□ -0.68
LIMS1-215ENST00000544547 IGHV7-4-1A0A0J9YVY3 117 aa10.77□□□□□ -0.69
LIMS1-215ENST00000544547 Q9HAA7 133 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 203.8 ms