RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 UFSP1Q6NVU6 142 aa5.97□□□□□ -1.45
VPS13D-211ENST00000543710 GYPEP15421 78 aa5.97□□□□□ -1.45
VPS13D-211ENST00000543710 C1orf134Q5TEV5 83 aa5.97□□□□□ -1.45
VPS13D-211ENST00000543710 GTSF1Q8WW33 167 aa5.97□□□□□ -1.45
VPS13D-211ENST00000543710 YPEL4Q96NS1 127 aa5.97□□□□□ -1.45
VPS13D-211ENST00000543710 FANCMQ8IYD8 2048 aa5.97□□□□□ -1.45
VPS13D-211ENST00000543710 TRBV6-5A0A0K0K1A5 114 aa5.96□□□□□ -1.45
VPS13D-211ENST00000543710 IGF1P05019 195 aa5.96□□□□□ -1.45
VPS13D-211ENST00000543710 MIFP14174 115 aa5.96□□□□□ -1.45
VPS13D-211ENST00000543710 COX17Q14061 63 aa5.96□□□□□ -1.45
VPS13D-211ENST00000543710 K7ERJ3 54 aa5.96□□□□□ -1.45
VPS13D-211ENST00000543710 PRB2P02812 416 aaPredicted RBP5.96□□□□□ -1.45
VPS13D-211ENST00000543710 ANGP03950 147 aaKnown RBP5.96□□□□□ -1.45
VPS13D-211ENST00000543710 HAMPP81172 84 aa5.96□□□□□ -1.45
VPS13D-211ENST00000543710 RBM3P98179 157 aaKnown RBP5.96□□□□□ -1.45
VPS13D-211ENST00000543710 MRGPRG-AS1Q2M3A8 158 aa5.96□□□□□ -1.45
VPS13D-211ENST00000543710 Q6Q795 121 aa5.96□□□□□ -1.45
VPS13D-211ENST00000543710 NEXN-AS1Q8NBZ9 246 aa5.96□□□□□ -1.45
VPS13D-211ENST00000543710 B9D2Q9BPU9 175 aa5.96□□□□□ -1.45
VPS13D-211ENST00000543710 TMEM223A0PJW6 202 aa5.96□□□□□ -1.46
VPS13D-211ENST00000543710 PFN2P35080 140 aa5.96□□□□□ -1.46
VPS13D-211ENST00000543710 ETDBQ3ZM63 59 aa5.96□□□□□ -1.46
VPS13D-211ENST00000543710 MORN5Q5VZ52 161 aa5.96□□□□□ -1.46
VPS13D-211ENST00000543710 NAA38Q9BRA0 125 aaKnown RBP5.96□□□□□ -1.46
VPS13D-211ENST00000543710 ZNF580Q9UK33 172 aa5.96□□□□□ -1.46
VPS13D-211ENST00000543710 C2orf70A6NJV1 201 aa5.96□□□□□ -1.46
VPS13D-211ENST00000543710 BRI3O95415 125 aa5.96□□□□□ -1.46
VPS13D-211ENST00000543710 C20orf203Q8NBC4 194 aa5.96□□□□□ -1.46
VPS13D-211ENST00000543710 UQCRQO14949 82 aa5.96□□□□□ -1.46
VPS13D-211ENST00000543710 TMEM61Q8N0U2 210 aa5.96□□□□□ -1.46
VPS13D-211ENST00000543710 BBC3Q96PG8 261 aaPredicted RBP5.96□□□□□ -1.46
VPS13D-211ENST00000543710 POLEQ07864 2286 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 GNRH2O43555 120 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 PTH2Q96A98 100 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 IGHV4-4A0A075B6R2 117 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 A0A0U1RRA0 63 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 COX7BP24311 80 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 SLURP1P55000 103 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 LINC00205P59089 165 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 NOP10Q9NPE3 64 aaKnown RBP5.95□□□□□ -1.46
VPS13D-211ENST00000543710 USF3Q68DE3 2245 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 RS1O15537 224 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 SERTAD4-AS1Q5TG53 156 aa5.95□□□□□ -1.46
VPS13D-211ENST00000543710 IGHV3-16A0A0C4DH30 117 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 IBA57-AS1B1ANH7 110 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 IGKV1-17P01599 117 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 NREPQ16612 68 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 LINC00467Q9BRT7 94 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 PRR15LQ9BU68 103 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 PIKFYVEQ9Y2I7 2098 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 HIST2H2BDQ6DRA6 164 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 CAMK2N2Q96S95 79 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 ZNF706Q9Y5V0 76 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-211ENST00000543710 A0A0J9YY99 117 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 PLA2G2EQ9NZK7 142 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 CHKB-CPT1BH3BT56 60 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 UBE2AP49459 152 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 NCKAP5O14513 1909 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 TRAV12-2A0A075B6T6 113 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 Q6ZSV7 163 aa5.94□□□□□ -1.46
VPS13D-211ENST00000543710 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-211ENST00000543710 IGKV2-29A2NJV5 120 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-211ENST00000543710 PCP2Q8IVA1 136 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 LINC01561Q8N1V8 128 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 C3orf22Q8N5N4 141 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 CCDC168Q8NDH2 2452 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 NCOR2Q9Y618 2525 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 TRBV12-3P01733 135 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 CFHR3Q02985 330 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 MLST8Q9BVC4 326 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 DEFB136Q30KP8 78 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 HIGD2BQ4VC39 106 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 C17orf77Q96MU5 243 aa5.93□□□□□ -1.46
VPS13D-211ENST00000543710 LY6LH3BQJ8 138 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 IGLV2-8P01709 118 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 ZNF524Q96C55 264 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 HHLA3Q9XRX5 114 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 IGKV1D-37A0A075B6S9 117 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 DIAPH2-AS1Q14236 149 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 LINC01006Q8NI28 216 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 RPL39LQ96EH5 51 aaKnown RBP5.92□□□□□ -1.46
VPS13D-211ENST00000543710 ANKRD39Q53RE8 183 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 UBE2D4Q9Y2X8 147 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 ALPK2Q86TB3 2170 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 SMR3AQ99954 134 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 TP53BP1Q12888 1972 aaPredicted RBP5.92□□□□□ -1.46
VPS13D-211ENST00000543710 CCDC140Q96MF4 163 aa5.92□□□□□ -1.46
VPS13D-211ENST00000543710 IGHV3-38A0A0C4DH36 116 aa5.91□□□□□ -1.46
VPS13D-211ENST00000543710 SEC61GP60059 68 aa5.91□□□□□ -1.46
VPS13D-211ENST00000543710 M0R2N4 97 aa5.91□□□□□ -1.46
VPS13D-211ENST00000543710 RPL18AQ02543 176 aaKnown RBP5.91□□□□□ -1.46
VPS13D-211ENST00000543710 ZFAND2AQ8N6M9 145 aa5.91□□□□□ -1.46
VPS13D-211ENST00000543710 ZNF625Q96I27 306 aaPredicted RBP5.91□□□□□ -1.46
VPS13D-211ENST00000543710 FAM240AA0A1B0GVK7 77 aa5.91□□□□□ -1.46
VPS13D-211ENST00000543710 PROP1O75360 226 aa5.91□□□□□ -1.46
VPS13D-211ENST00000543710 Q8N7P7 452 aa5.91□□□□□ -1.46
VPS13D-211ENST00000543710 DHRS4-AS1Q9P1J3 65 aa5.91□□□□□ -1.46
VPS13D-211ENST00000543710 TRBV6-4A0A1B0GX49 114 aa5.91□□□□□ -1.46
VPS13D-211ENST00000543710 Q6ZUT4 128 aa5.91□□□□□ -1.46
VPS13D-211ENST00000543710 PLA2G1BP04054 148 aaKnown RBP5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms