RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SMKR1	H3BMG3	65 aa		7.07	□□□□□ -1.28
CPSF7-221	ENST00000543545	CKS2	P33552	79 aa		7.07	□□□□□ -1.28
CPSF7-221	ENST00000543545	ELOB	Q15370	118 aa		7.07	□□□□□ -1.28
CPSF7-221	ENST00000543545	SH2D6	Q7Z4S9	175 aa		7.07	□□□□□ -1.28
CPSF7-221	ENST00000543545	UBE2DNL	Q8IWF7	75 aa		7.07	□□□□□ -1.28
CPSF7-221	ENST00000543545	GATD1	Q8NB37	220 aa		7.07	□□□□□ -1.28
CPSF7-221	ENST00000543545	NEXN-AS1	Q8NBZ9	246 aa		7.07	□□□□□ -1.28
CPSF7-221	ENST00000543545	ATP6V0E2	Q8NHE4	81 aa		7.07	□□□□□ -1.28
CPSF7-221	ENST00000543545	MRAP2	Q96G30	205 aa		7.07	□□□□□ -1.28
CPSF7-221	ENST00000543545		Q9UF83	564 aa		7.07	□□□□□ -1.28
CPSF7-221	ENST00000543545	TRBV7-3	A0A075B6L6	115 aa		7.06	□□□□□ -1.28
CPSF7-221	ENST00000543545	NCR2	O95944	276 aa		7.06	□□□□□ -1.28
CPSF7-221	ENST00000543545	CCL18	P55774	89 aa		7.06	□□□□□ -1.28
CPSF7-221	ENST00000543545	COX19	Q49B96	90 aa		7.06	□□□□□ -1.28
CPSF7-221	ENST00000543545	MRPL51	Q4U2R6	128 aa	Known RBP	7.06	□□□□□ -1.28
CPSF7-221	ENST00000543545	OR10J3	Q5JRS4	329 aa		7.06	□□□□□ -1.28
CPSF7-221	ENST00000543545	DNAJC30	Q96LL9	226 aa		7.06	□□□□□ -1.28
CPSF7-221	ENST00000543545	NIT2	Q9NQR4	276 aa		7.06	□□□□□ -1.28
CPSF7-221	ENST00000543545	TRBV24-1	A0A075B6N3	115 aa		7.05	□□□□□ -1.28
CPSF7-221	ENST00000543545		D6R8Y8	96 aa		7.05	□□□□□ -1.28
CPSF7-221	ENST00000543545	SCO1	O75880	301 aa		7.05	□□□□□ -1.28
CPSF7-221	ENST00000543545	PPP1R17	O96001	155 aa		7.05	□□□□□ -1.28
CPSF7-221	ENST00000543545	APCS	P02743	223 aa		7.05	□□□□□ -1.28
CPSF7-221	ENST00000543545	TMEM136	Q6ZRR5	245 aa		7.05	□□□□□ -1.28
CPSF7-221	ENST00000543545	FRZB	Q92765	325 aa		7.05	□□□□□ -1.28
CPSF7-221	ENST00000543545	RPL39L	Q96EH5	51 aa	Known RBP	7.05	□□□□□ -1.28
CPSF7-221	ENST00000543545	GNB1L	Q9BYB4	327 aa		7.05	□□□□□ -1.28
CPSF7-221	ENST00000543545	STARD9	Q9P2P6	4700 aa		7.05	□□□□□ -1.28
CPSF7-221	ENST00000543545	IGHV3-38	A0A0C4DH36	116 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	GAS8-AS1	O95177	125 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	HLA-DQA1	P01909	254 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	PPBP	P02775	128 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	UBE2D3	P61077	147 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	UBE2D2	P62837	147 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	FABP9	Q0Z7S8	132 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	ESRG	Q1W209	222 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	LYPD5	Q6UWN5	251 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	ORMDL3	Q8N138	153 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	GTSF1L	Q9H1H1	148 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	ST20	Q9HBF5	79 aa		7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	DYNC2H1	Q8NCM8	4307 aa	Known RBP	7.04	□□□□□ -1.28
CPSF7-221	ENST00000543545	LY6G6C	O95867	125 aa		7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	MT-ND6	P03923	174 aa		7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	PMCH	P20382	165 aa		7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	RPS10	P46783	165 aa	Known RBP	7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	KIAA1644	Q3SXP7	199 aa		7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	DAZ4	Q86SG3	579 aa	Known RBP	7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	PRELID3A	Q96N28	172 aa		7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	MRPL18	Q9H0U6	180 aa	Known RBP	7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	DAZ3	Q9NR90	486 aa	Known RBP	7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	TRAPPC1	Q9Y5R8	145 aa		7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	PLEC	Q15149	4684 aa	Known RBP	7.03	□□□□□ -1.28
CPSF7-221	ENST00000543545	NACA	E9PAV3	2078 aa		7.02	□□□□□ -1.29
CPSF7-221	ENST00000543545	SDHAF1	A6NFY7	115 aa		7.02	□□□□□ -1.29
CPSF7-221	ENST00000543545	TNFRSF6B	O95407	300 aa		7.02	□□□□□ -1.29
CPSF7-221	ENST00000543545	DEFB104A	Q8WTQ1	72 aa		7.02	□□□□□ -1.29
CPSF7-221	ENST00000543545	YPEL4	Q96NS1	127 aa		7.02	□□□□□ -1.29
CPSF7-221	ENST00000543545	LINC00588	Q9Y4M8	146 aa		7.02	□□□□□ -1.29
CPSF7-221	ENST00000543545	TRAV8-6	A0A0B4J262	113 aa		7.01	□□□□□ -1.29
CPSF7-221	ENST00000543545	TRBV6-5	A0A0K0K1A5	114 aa		7.01	□□□□□ -1.29
CPSF7-221	ENST00000543545	NPY	P01303	97 aa		7.01	□□□□□ -1.29
CPSF7-221	ENST00000543545	LINC00694	P0DN24	101 aa		7.01	□□□□□ -1.29
CPSF7-221	ENST00000543545	SUMO2	P61956	95 aa	Known RBP	7.01	□□□□□ -1.29
CPSF7-221	ENST00000543545	LGALS9C	Q6DKI2	356 aa		7.01	□□□□□ -1.29
CPSF7-221	ENST00000543545	NRAC	Q8N912	160 aa		7.01	□□□□□ -1.29
CPSF7-221	ENST00000543545	LOC389332	A0A1B0GUA5	103 aa		7	□□□□□ -1.29
CPSF7-221	ENST00000543545		I3L3M4	83 aa		7	□□□□□ -1.29
CPSF7-221	ENST00000543545	VCY	O14598	125 aa		7	□□□□□ -1.29
CPSF7-221	ENST00000543545	TIRAP	P58753	221 aa		7	□□□□□ -1.29
CPSF7-221	ENST00000543545	COTL1	Q14019	142 aa		7	□□□□□ -1.29
CPSF7-221	ENST00000543545	TMEM97	Q5BJF2	176 aa		7	□□□□□ -1.29
CPSF7-221	ENST00000543545	LELP1	Q5T871	98 aa		7	□□□□□ -1.29
CPSF7-221	ENST00000543545	C20orf78	Q9BR46	151 aa		7	□□□□□ -1.29
CPSF7-221	ENST00000543545	TMEM70	Q9BUB7	260 aa		7	□□□□□ -1.29
CPSF7-221	ENST00000543545	MRPS16	Q9Y3D3	137 aa	Known RBP	7	□□□□□ -1.29
CPSF7-221	ENST00000543545	COLCA2	A8K830	154 aa		6.99	□□□□□ -1.29
CPSF7-221	ENST00000543545	PHOX2A	O14813	284 aa		6.99	□□□□□ -1.29
CPSF7-221	ENST00000543545	FCER1G	P30273	86 aa		6.99	□□□□□ -1.29
CPSF7-221	ENST00000543545	LINC00476	Q8WZB0	136 aa		6.99	□□□□□ -1.29
CPSF7-221	ENST00000543545	KIR2DL4	Q99706	377 aa		6.99	□□□□□ -1.29
CPSF7-221	ENST00000543545	MAP1LC3A	Q9H492	121 aa		6.99	□□□□□ -1.29
CPSF7-221	ENST00000543545	LAMTOR2	Q9Y2Q5	125 aa		6.99	□□□□□ -1.29
CPSF7-221	ENST00000543545	TRBV25-1	A0A075B6N4	114 aa		6.98	□□□□□ -1.29
CPSF7-221	ENST00000543545	TRBV6-8	A0A0A6YYG3	113 aa		6.98	□□□□□ -1.29
CPSF7-221	ENST00000543545	IGHV1-24	A0A0C4DH33	117 aa		6.98	□□□□□ -1.29
CPSF7-221	ENST00000543545	TMEM262	E9PQX1	116 aa		6.98	□□□□□ -1.29
CPSF7-221	ENST00000543545	RAB5A	P20339	215 aa		6.98	□□□□□ -1.29
CPSF7-221	ENST00000543545	AMT	P48728	403 aa		6.98	□□□□□ -1.29
CPSF7-221	ENST00000543545	POLR2K	P53803	58 aa	Known RBP	6.98	□□□□□ -1.29
CPSF7-221	ENST00000543545	CHCHD5	Q9BSY4	110 aa		6.98	□□□□□ -1.29
CPSF7-221	ENST00000543545		Q9H8V8	135 aa		6.98	□□□□□ -1.29
CPSF7-221	ENST00000543545	TRBV27	A0A0K0K1C4	114 aa		6.97	□□□□□ -1.29
CPSF7-221	ENST00000543545	UBE2L6	O14933	153 aa		6.97	□□□□□ -1.29
CPSF7-221	ENST00000543545	NTM-AS1	Q6ZSK4	140 aa		6.97	□□□□□ -1.29
CPSF7-221	ENST00000543545	WFDC10B	Q8IUB3	73 aa		6.97	□□□□□ -1.29
CPSF7-221	ENST00000543545	ALKBH7	Q9BT30	221 aa	Predicted RBP	6.97	□□□□□ -1.29
CPSF7-221	ENST00000543545	TMEM243	Q9BU79	118 aa		6.97	□□□□□ -1.29
CPSF7-221	ENST00000543545	SMIM2	Q9BVW6	85 aa		6.97	□□□□□ -1.29
CPSF7-221	ENST00000543545	IGLV2-18	A0A075B6J9	118 aa		6.96	□□□□□ -1.3
CPSF7-221	ENST00000543545	SIVA1	O15304	175 aa		6.96	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 315.3 ms