RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 PRM2P04554 102 aa3.63□□□□□ -1.83
CLIP1-217ENST00000543205 CACNG7P62955 275 aa3.63□□□□□ -1.83
CLIP1-217ENST00000543205 Q6AWC8 147 aa3.63□□□□□ -1.83
CLIP1-217ENST00000543205 Q86TA4 180 aa3.63□□□□□ -1.83
CLIP1-217ENST00000543205 C16orf74Q96GX8 76 aa3.63□□□□□ -1.83
CLIP1-217ENST00000543205 EIF5A2Q9GZV4 153 aaKnown RBP3.63□□□□□ -1.83
CLIP1-217ENST00000543205 MED9Q9NWA0 146 aa3.63□□□□□ -1.83
CLIP1-217ENST00000543205 IGHV1OR15-1A0A075B7D0 117 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 TRBV6-1A0A0K0K1D8 114 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 LTAP01374 205 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 PFN1P07737 140 aaKnown RBP3.62□□□□□ -1.83
CLIP1-217ENST00000543205 SPART-AS1P0CW21 52 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 AZU1P20160 251 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 RPL35P42766 123 aaKnown RBP3.62□□□□□ -1.83
CLIP1-217ENST00000543205 IFITM2Q01629 132 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 ZNF506Q5JVG8 444 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 MUC21Q5SSG8 566 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 Q6ZQT7 251 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 ZNF493Q6ZR52 646 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 BAGE2Q86Y30 109 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 EIF4E3Q8N5X7 224 aaKnown RBP3.62□□□□□ -1.83
CLIP1-217ENST00000543205 TMEM263Q8WUH6 116 aaKnown RBP3.62□□□□□ -1.83
CLIP1-217ENST00000543205 LINC00467Q9BRT7 94 aa3.62□□□□□ -1.83
CLIP1-217ENST00000543205 FABP5P3A8MUU1 101 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 K7EQD1 137 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 LINC00614P0C842 121 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 NANOS2P60321 138 aaKnown RBP3.61□□□□□ -1.83
CLIP1-217ENST00000543205 ZNF767PQ75MW2 155 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 TMEM183AQ8IXX5 376 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 MUC7Q8TAX7 377 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 TIMM8BQ9Y5J9 83 aaPredicted RBP3.61□□□□□ -1.83
CLIP1-217ENST00000543205 A6NDN8 102 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 TMEM250H0YL14 139 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 GNG4P50150 75 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 ZNF80P51504 273 aaPredicted RBP3.61□□□□□ -1.83
CLIP1-217ENST00000543205 FAM162BQ5T6X4 162 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 FAM222AQ5U5X8 452 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 ZC2HC1AQ96GY0 325 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 KCNS1Q96KK3 526 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 DERL1Q9BUN8 251 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 SDF2L1Q9HCN8 221 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 NOP10Q9NPE3 64 aaKnown RBP3.61□□□□□ -1.83
CLIP1-217ENST00000543205 TP53TG3Q9ULZ0 132 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 CELA1Q9UNI1 258 aa3.61□□□□□ -1.83
CLIP1-217ENST00000543205 PLAC8L1A1L4L8 177 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 C3orf84H3BNL1 204 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 TCAPO15273 167 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 DEFB130BP0DP73 79 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 DEFB130AP0DP74 79 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 MGST1P10620 155 aaKnown RBP3.6□□□□□ -1.83
CLIP1-217ENST00000543205 PFN2P35080 140 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 DAD1P61803 113 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 PEA15Q15121 130 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 TDRG1Q3Y452 100 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 TMEM97Q5BJF2 176 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 CENPWQ5EE01 88 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 IBA57Q5T440 356 aaKnown RBP3.6□□□□□ -1.83
CLIP1-217ENST00000543205 ZFAND6Q6FIF0 208 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 Q6ZRP5 223 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 C9orf85Q96MD7 179 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 B4DEV8 164 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 GNRH2O43555 120 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 SH2D1AO60880 128 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 CRIP1P50238 77 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 DAZ2Q13117 558 aaKnown RBP3.6□□□□□ -1.83
CLIP1-217ENST00000543205 C12orf74Q32Q52 190 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 C11orf72Q8NBR9 251 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 SMIM12Q96EX1 92 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 PARLQ9H300 379 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 BIN3Q9NQY0 253 aa3.6□□□□□ -1.83
CLIP1-217ENST00000543205 COL7A1Q02388 2944 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 TRGV1A0A0A0MS02 117 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 TRAV10A0A0B4J240 114 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 TRAV8-4A0A0B4J246 113 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 IGHV3-16A0A0C4DH30 117 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 NUPR2A6NF83 97 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 TSTD3H0UI37 97 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 P01737 135 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 SRP19P09132 144 aaKnown RBP3.59□□□□□ -1.83
CLIP1-217ENST00000543205 S100A4P26447 101 aaKnown RBP3.59□□□□□ -1.83
CLIP1-217ENST00000543205 ASIPP42127 132 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 CLLU1Q5K131 121 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 Q6ZTC4 211 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 ZNF575Q86XF7 245 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 RPL36ALQ969Q0 106 aaKnown RBP3.59□□□□□ -1.83
CLIP1-217ENST00000543205 SMDT1Q9H4I9 107 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 MDFICQ9P1T7 246 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 SS18L2Q9UHA2 77 aa3.59□□□□□ -1.83
CLIP1-217ENST00000543205 TRGV2A0A075B6R0 118 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 TMSB15BA0A087X1C1 80 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 DEFB131BA0A096LNP1 70 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 IGKV3D-20A0A0C4DH25 116 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 A0A1B0GV90 55 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 ZNF727A8MUV8 499 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 KRBOX1C9JBD0 128 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 C9JCJ5 164 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 SPINK4O60575 86 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 HTN3P15516 51 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 CTRLP40313 264 aa3.58□□□□□ -1.84
CLIP1-217ENST00000543205 LGALS9BQ3B8N2 356 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms