RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 GAGE6Q13070 117 aa11.26□□□□□ -0.61
CLSTN3-214ENST00000542663 SPACA4Q8TDM5 124 aa11.26□□□□□ -0.61
CLSTN3-214ENST00000542663 RNF185Q96GF1 192 aa11.26□□□□□ -0.61
CLSTN3-214ENST00000542663 FMC1Q96HJ9 113 aa11.26□□□□□ -0.61
CLSTN3-214ENST00000542663 CTXND1A0A1B0GTU2 59 aa11.25□□□□□ -0.61
CLSTN3-214ENST00000542663 hDV102S1A0JD36 115 aa11.25□□□□□ -0.61
CLSTN3-214ENST00000542663 PHOX2AO14813 284 aa11.25□□□□□ -0.61
CLSTN3-214ENST00000542663 LTAP01374 205 aa11.25□□□□□ -0.61
CLSTN3-214ENST00000542663 RGS21Q2M5E4 152 aa11.25□□□□□ -0.61
CLSTN3-214ENST00000542663 LINC01600Q96MT4 127 aa11.25□□□□□ -0.61
CLSTN3-214ENST00000542663 NKX6-2Q9C056 277 aaPredicted RBP11.25□□□□□ -0.61
CLSTN3-214ENST00000542663 IGHV3-64A0A075B6Q5 118 aa11.24□□□□□ -0.61
CLSTN3-214ENST00000542663 TRBV6-1A0A0K0K1D8 114 aa11.24□□□□□ -0.61
CLSTN3-214ENST00000542663 UBE2G1P62253 170 aa11.24□□□□□ -0.61
CLSTN3-214ENST00000542663 REG3AQ06141 175 aa11.24□□□□□ -0.61
CLSTN3-214ENST00000542663 PLAC8Q9NZF1 115 aa11.24□□□□□ -0.61
CLSTN3-214ENST00000542663 TMEM97Q5BJF2 176 aa11.23□□□□□ -0.61
CLSTN3-214ENST00000542663 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.23□□□□□ -0.61
CLSTN3-214ENST00000542663 DPH3Q96FX2 82 aa11.23□□□□□ -0.61
CLSTN3-214ENST00000542663 DERL1Q9BUN8 251 aa11.23□□□□□ -0.61
CLSTN3-214ENST00000542663 TRBV25-1A0A075B6N4 114 aa11.22□□□□□ -0.61
CLSTN3-214ENST00000542663 GIPP09681 153 aaPredicted RBP11.22□□□□□ -0.61
CLSTN3-214ENST00000542663 KIF25-AS1Q9Y6Z4 181 aa11.22□□□□□ -0.61
CLSTN3-214ENST00000542663 MUC21A0A0G2JKD1 596 aa11.21□□□□□ -0.61
CLSTN3-214ENST00000542663 MUC21A0A140T8X8 626 aa11.21□□□□□ -0.61
CLSTN3-214ENST00000542663 F5H697 171 aa11.21□□□□□ -0.61
CLSTN3-214ENST00000542663 SNAI2O43623 268 aa11.21□□□□□ -0.61
CLSTN3-214ENST00000542663 IQCJQ1A5X6 159 aa11.21□□□□□ -0.61
CLSTN3-214ENST00000542663 RPL7L1Q6DKI1 246 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-214ENST00000542663 C20orf203Q8NBC4 194 aa11.21□□□□□ -0.61
CLSTN3-214ENST00000542663 SSBP4Q9BWG4 385 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-214ENST00000542663 ZNF471Q9BX82 626 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-214ENST00000542663 DPH3P1Q9H4G8 78 aa11.21□□□□□ -0.61
CLSTN3-214ENST00000542663 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-214ENST00000542663 Q5BKY6 102 aa11.2□□□□□ -0.62
CLSTN3-214ENST00000542663 GFRA4Q9GZZ7 299 aa11.2□□□□□ -0.62
CLSTN3-214ENST00000542663 CXCL1P09341 107 aa11.19□□□□□ -0.62
CLSTN3-214ENST00000542663 AP5S1Q9NUS5 200 aa11.19□□□□□ -0.62
CLSTN3-214ENST00000542663 IGLV4-60A0A075B6I1 120 aa11.18□□□□□ -0.62
CLSTN3-214ENST00000542663 TRAV8-4A0A0B4J246 113 aa11.18□□□□□ -0.62
CLSTN3-214ENST00000542663 P01737 135 aa11.18□□□□□ -0.62
CLSTN3-214ENST00000542663 OR5AL1P0C617 328 aa11.18□□□□□ -0.62
CLSTN3-214ENST00000542663 PRR3P79522 188 aaKnown RBP11.18□□□□□ -0.62
CLSTN3-214ENST00000542663 C7orf33Q8WU49 177 aa11.18□□□□□ -0.62
CLSTN3-214ENST00000542663 IGHV1-24A0A0C4DH33 117 aa11.17□□□□□ -0.62
CLSTN3-214ENST00000542663 RAB5CP51148 216 aa11.17□□□□□ -0.62
CLSTN3-214ENST00000542663 FXYD6-FXYD2A0A087WZ82 144 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 A0A0J9YXV3 536 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 MAP1LC3B2A6NCE7 125 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 AKR1C3P42330 323 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 FHITP49789 147 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 KRTAP10-8P60410 259 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 SSTP61278 116 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 COX6A2Q02221 97 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 SPANXN1Q5VSR9 72 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 C15orf56Q8N910 161 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 TCEAL7Q9BRU2 100 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 MAP1LC3BQ9GZQ8 125 aa11.16□□□□□ -0.62
CLSTN3-214ENST00000542663 A0A1B0GUV1 79 aa11.15□□□□□ -0.62
CLSTN3-214ENST00000542663 CST9LP1Q5W188 147 aa11.15□□□□□ -0.62
CLSTN3-214ENST00000542663 WDR73Q6P4I2 378 aa11.15□□□□□ -0.62
CLSTN3-214ENST00000542663 MLST8Q9BVC4 326 aa11.15□□□□□ -0.62
CLSTN3-214ENST00000542663 BORCS7-ASMTA0A0B4J1R7 106 aa11.14□□□□□ -0.63
CLSTN3-214ENST00000542663 M0QY20 66 aa11.14□□□□□ -0.63
CLSTN3-214ENST00000542663 GZMBP10144 247 aa11.14□□□□□ -0.63
CLSTN3-214ENST00000542663 AKR1C8PQ5T2L2 129 aa11.14□□□□□ -0.63
CLSTN3-214ENST00000542663 INO80EQ8NBZ0 244 aaPredicted RBP11.14□□□□□ -0.63
CLSTN3-214ENST00000542663 PRSS3P2Q8NHM4 247 aa11.14□□□□□ -0.63
CLSTN3-214ENST00000542663 GTSF1Q8WW33 167 aa11.14□□□□□ -0.63
CLSTN3-214ENST00000542663 LPAP08519 4548 aa11.14□□□□□ -0.63
CLSTN3-214ENST00000542663 G3V3Q6 166 aa11.13□□□□□ -0.63
CLSTN3-214ENST00000542663 MAJINQ3KP22 176 aa11.13□□□□□ -0.63
CLSTN3-214ENST00000542663 STOML3Q8TAV4 291 aa11.13□□□□□ -0.63
CLSTN3-214ENST00000542663 AP1S3Q96PC3 154 aa11.13□□□□□ -0.63
CLSTN3-214ENST00000542663 NDUFS6O75380 124 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-214ENST00000542663 SMIM17P0DL12 118 aa11.12□□□□□ -0.63
CLSTN3-214ENST00000542663 TMEM243Q9BU79 118 aa11.12□□□□□ -0.63
CLSTN3-214ENST00000542663 IGKV2-24A0A0C4DH68 120 aa11.11□□□□□ -0.63
CLSTN3-214ENST00000542663 PAGE4O60829 102 aa11.11□□□□□ -0.63
CLSTN3-214ENST00000542663 GAS8-AS1O95177 125 aa11.11□□□□□ -0.63
CLSTN3-214ENST00000542663 RPS10P46783 165 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-214ENST00000542663 SUMO4Q6EEV6 95 aa11.11□□□□□ -0.63
CLSTN3-214ENST00000542663 SCO2A0A1W2PP80 73 aa11.1□□□□□ -0.63
CLSTN3-214ENST00000542663 MGPP08493 103 aa11.1□□□□□ -0.63
CLSTN3-214ENST00000542663 STPG4Q8N801 248 aa11.1□□□□□ -0.63
CLSTN3-214ENST00000542663 LYPD6BQ8NI32 183 aa11.1□□□□□ -0.63
CLSTN3-214ENST00000542663 GAGE12HA6NDE8 117 aa11.09□□□□□ -0.63
CLSTN3-214ENST00000542663 ARPC5O15511 151 aa11.09□□□□□ -0.63
CLSTN3-214ENST00000542663 S100A9P06702 114 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-214ENST00000542663 NKX2-5P52952 324 aaPredicted RBP11.09□□□□□ -0.63
CLSTN3-214ENST00000542663 HIGD2BQ4VC39 106 aa11.09□□□□□ -0.63
CLSTN3-214ENST00000542663 BAGE2Q86Y30 109 aa11.09□□□□□ -0.63
CLSTN3-214ENST00000542663 A0A096LNI7 61 aa11.08□□□□□ -0.64
CLSTN3-214ENST00000542663 SMLR1H3BR10 107 aa11.08□□□□□ -0.64
CLSTN3-214ENST00000542663 H7C1H1 209 aa11.08□□□□□ -0.64
CLSTN3-214ENST00000542663 SPINK6Q6UWN8 80 aa11.08□□□□□ -0.64
CLSTN3-214ENST00000542663 PGLYRP4Q96LB8 373 aa11.08□□□□□ -0.64
CLSTN3-214ENST00000542663 CYTL1Q9NRR1 136 aa11.08□□□□□ -0.64
CLSTN3-214ENST00000542663 SULT1A2P50226 295 aa11.07□□□□□ -0.64
CLSTN3-214ENST00000542663 SRSF9Q13242 221 aaKnown RBP eCLIP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms