RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 TRBV7-9A0A0J9YWB2 115 aa9.3□□□□□ -0.92
RNF4-222ENST00000541204 J3QR89 54 aa9.3□□□□□ -0.92
RNF4-222ENST00000541204 POLR2KP53803 58 aaKnown RBP9.3□□□□□ -0.92
RNF4-222ENST00000541204 KHDC1LQ5JSQ8 128 aa9.3□□□□□ -0.92
RNF4-222ENST00000541204 ACANP16112 2415 aa9.3□□□□□ -0.92
RNF4-222ENST00000541204 TRAV12-2A0A075B6T6 113 aa9.3□□□□□ -0.92
RNF4-222ENST00000541204 TMEM238LA0A1B0GVL6 79 aa9.3□□□□□ -0.92
RNF4-222ENST00000541204 A6NJY4 79 aa9.3□□□□□ -0.92
RNF4-222ENST00000541204 APOMO95445 188 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 HOXD3P31249 432 aaPredicted RBP9.29□□□□□ -0.92
RNF4-222ENST00000541204 ID1P41134 155 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 PMVKQ15126 192 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 FAM74A4Q5TZK3 123 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 WFDC11Q8NEX6 87 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 SDHAF1A6NFY7 115 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 K7EMT4 169 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 FSHBP01225 129 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 UBE2D1P51668 147 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 KIR2DL4Q99706 377 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 LOC107984156A0A0G2JMH3 177 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 VCYO14598 125 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 TSPAN13O95857 204 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 ARL17AQ8IVW1 177 aa9.29□□□□□ -0.92
RNF4-222ENST00000541204 A0A0J9YY99 117 aa9.28□□□□□ -0.92
RNF4-222ENST00000541204 TSPEAR-AS2P59090 65 aa9.28□□□□□ -0.92
RNF4-222ENST00000541204 HERVK_113P61574 105 aa9.28□□□□□ -0.92
RNF4-222ENST00000541204 TMEM170BQ5T4T1 132 aa9.28□□□□□ -0.92
RNF4-222ENST00000541204 PSMB2P49721 201 aa9.28□□□□□ -0.92
RNF4-222ENST00000541204 SLURP1P55000 103 aa9.28□□□□□ -0.92
RNF4-222ENST00000541204 RPL32P62910 135 aaKnown RBP9.28□□□□□ -0.92
RNF4-222ENST00000541204 ZNRF2Q8NHG8 242 aa9.28□□□□□ -0.92
RNF4-222ENST00000541204 ZNF256Q9Y2P7 627 aaPredicted RBP9.28□□□□□ -0.92
RNF4-222ENST00000541204 HELZ2Q9BYK8 2649 aaKnown RBP9.27□□□□□ -0.93
RNF4-222ENST00000541204 ITPR2Q14571 2701 aa9.27□□□□□ -0.93
RNF4-222ENST00000541204 KRTAP1-3Q8IUG1 177 aa9.27□□□□□ -0.93
RNF4-222ENST00000541204 SPATA25Q9BR10 227 aa9.27□□□□□ -0.93
RNF4-222ENST00000541204 ZNF580Q9UK33 172 aa9.27□□□□□ -0.93
RNF4-222ENST00000541204 PAPPA-AS1Q5QFB9 102 aa9.27□□□□□ -0.93
RNF4-222ENST00000541204 CFAP126Q5VTH2 177 aa9.27□□□□□ -0.93
RNF4-222ENST00000541204 C11orf44Q8N8P7 122 aa9.27□□□□□ -0.93
RNF4-222ENST00000541204 DLX4Q92988 240 aaPredicted RBP9.27□□□□□ -0.93
RNF4-222ENST00000541204 MDFICQ9P1T7 246 aa9.27□□□□□ -0.93
RNF4-222ENST00000541204 MTORP42345 2549 aa9.27□□□□□ -0.93
RNF4-222ENST00000541204 SMCPP49901 116 aaPredicted RBP9.26□□□□□ -0.93
RNF4-222ENST00000541204 TMEM141Q96I45 108 aa9.26□□□□□ -0.93
RNF4-222ENST00000541204 SNRPD3P62318 126 aaKnown RBP9.26□□□□□ -0.93
RNF4-222ENST00000541204 TIMM17AQ99595 171 aa9.26□□□□□ -0.93
RNF4-222ENST00000541204 OPRPNQ99935 248 aaPredicted RBP9.26□□□□□ -0.93
RNF4-222ENST00000541204 TRBV27A0A0K0K1C4 114 aa9.25□□□□□ -0.93
RNF4-222ENST00000541204 ELANEP08246 267 aa9.25□□□□□ -0.93
RNF4-222ENST00000541204 ZNF56Q15929 161 aa9.25□□□□□ -0.93
RNF4-222ENST00000541204 SPINK13Q1W4C9 94 aa9.25□□□□□ -0.93
RNF4-222ENST00000541204 NDUFA11Q86Y39 141 aa9.25□□□□□ -0.93
RNF4-222ENST00000541204 LGALS9O00182 355 aa9.25□□□□□ -0.93
RNF4-222ENST00000541204 ZNF876PQ49A33 203 aa9.25□□□□□ -0.93
RNF4-222ENST00000541204 ZNF418Q8TF45 676 aaPredicted RBP9.25□□□□□ -0.93
RNF4-222ENST00000541204 UBE2E2Q96LR5 201 aa9.25□□□□□ -0.93
RNF4-222ENST00000541204 WNK1Q9H4A3 2382 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 IGHV3-16A0A0C4DH30 117 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 TCTEX1D4Q5JR98 221 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 NIPBLQ6KC79 2804 aaeCLIP9.24□□□□□ -0.93
RNF4-222ENST00000541204 IGHV3-30P01768 117 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 IGHV3-30-5P0DP03 117 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 HTN1P15515 57 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 UBE2D3P61077 147 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 UBE2D2P62837 147 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 FOXI1Q12951 378 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 LRRC75A-AS1Q8N1F1 130 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 Q8N1Y9 231 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 TMEM89A2RUT3 159 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 CFC1BP0CG36 223 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 CFC1P0CG37 223 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 NFE4Q86UQ8 179 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 C9orf85Q96MD7 179 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 C1QTNF4Q9BXJ3 329 aa9.24□□□□□ -0.93
RNF4-222ENST00000541204 TRBV6-5A0A0K0K1A5 114 aa9.23□□□□□ -0.93
RNF4-222ENST00000541204 K7EQG2 157 aa9.23□□□□□ -0.93
RNF4-222ENST00000541204 M0QY20 66 aa9.23□□□□□ -0.93
RNF4-222ENST00000541204 SCGB1A1P11684 91 aa9.23□□□□□ -0.93
RNF4-222ENST00000541204 SLC25A29Q8N8R3 303 aa9.23□□□□□ -0.93
RNF4-222ENST00000541204 PTH2Q96A98 100 aa9.23□□□□□ -0.93
RNF4-222ENST00000541204 AMELXQ99217 191 aa9.23□□□□□ -0.93
RNF4-222ENST00000541204 A0A0J9YX75 114 aa9.23□□□□□ -0.93
RNF4-222ENST00000541204 J3QQQ9 107 aa9.23□□□□□ -0.93
RNF4-222ENST00000541204 KNCNA6PVL3 124 aa9.22□□□□□ -0.93
RNF4-222ENST00000541204 IGHV3-64A0A075B6Q5 118 aa9.22□□□□□ -0.93
RNF4-222ENST00000541204 A0A1W2PRX2 142 aa9.22□□□□□ -0.93
RNF4-222ENST00000541204 TCL1BO95988 128 aa9.22□□□□□ -0.93
RNF4-222ENST00000541204 LGALS3P17931 250 aaKnown RBP9.22□□□□□ -0.93
RNF4-222ENST00000541204 P0DMU3 169 aa9.21□□□□□ -0.93
RNF4-222ENST00000541204 FAM231AP0DMU4 169 aa9.21□□□□□ -0.93
RNF4-222ENST00000541204 FAM231CP0DMU5 169 aa9.21□□□□□ -0.93
RNF4-222ENST00000541204 SYT8Q8NBV8 401 aa9.21□□□□□ -0.93
RNF4-222ENST00000541204 PRM2P04554 102 aa9.2□□□□□ -0.94
RNF4-222ENST00000541204 IGHV1OR15-1A0A075B7D0 117 aa9.2□□□□□ -0.94
RNF4-222ENST00000541204 DEFB131AP59861 70 aa9.2□□□□□ -0.94
RNF4-222ENST00000541204 NSUN5P1Q3KNT7 163 aa9.2□□□□□ -0.94
RNF4-222ENST00000541204 C10orf126Q8N4M7 172 aa9.2□□□□□ -0.94
RNF4-222ENST00000541204 ATP6V0E2Q8NHE4 81 aa9.2□□□□□ -0.94
RNF4-222ENST00000541204 NOTCH2Q04721 2471 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms