RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TMEM101Q96IK0 257 aa8□□□□□ -1.13
CLIP1-213ENST00000540338 TRGV4A0A0C4DH28 118 aa8□□□□□ -1.13
CLIP1-213ENST00000540338 NEXN-AS1Q8NBZ9 246 aa8□□□□□ -1.13
CLIP1-213ENST00000540338 FAM19A4Q96LR4 140 aa8□□□□□ -1.13
CLIP1-213ENST00000540338 GAGE12BA1L429 117 aa7.99□□□□□ -1.13
CLIP1-213ENST00000540338 ADAMTSL5Q6ZMM2 481 aa7.99□□□□□ -1.13
CLIP1-213ENST00000540338 C2orf91Q6ZV80 131 aa7.99□□□□□ -1.13
CLIP1-213ENST00000540338 IGKV2D-26A0A0A0MRZ7 120 aa7.99□□□□□ -1.13
CLIP1-213ENST00000540338 RPL32P62910 135 aaKnown RBP7.99□□□□□ -1.13
CLIP1-213ENST00000540338 CST9LQ9H4G1 147 aa7.99□□□□□ -1.13
CLIP1-213ENST00000540338 H7C2G1 150 aa7.99□□□□□ -1.13
CLIP1-213ENST00000540338 CIRBPQ14011 172 aaKnown RBP7.99□□□□□ -1.13
CLIP1-213ENST00000540338 M0QY20 66 aa7.98□□□□□ -1.13
CLIP1-213ENST00000540338 IGHV3-38A0A0C4DH36 116 aa7.98□□□□□ -1.13
CLIP1-213ENST00000540338 ZNRF2Q8NHG8 242 aa7.98□□□□□ -1.13
CLIP1-213ENST00000540338 TRBV6-5A0A0K0K1A5 114 aa7.98□□□□□ -1.13
CLIP1-213ENST00000540338 E9PLD3 99 aa7.98□□□□□ -1.13
CLIP1-213ENST00000540338 POLR2KP53803 58 aaKnown RBP7.98□□□□□ -1.13
CLIP1-213ENST00000540338 HIST2H2BDQ6DRA6 164 aa7.98□□□□□ -1.13
CLIP1-213ENST00000540338 A0A096LNT2 108 aa7.98□□□□□ -1.13
CLIP1-213ENST00000540338 FSHBP01225 129 aa7.98□□□□□ -1.13
CLIP1-213ENST00000540338 TRBV27A0A0K0K1C4 114 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 LINC01546A6NGU7 62 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 NXPH4O95158 308 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 CRYGDP07320 174 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 C20orf203Q8NBC4 194 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 TIMM21Q9BVV7 248 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 C11orf86A6NJI1 115 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 J3QQQ9 107 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 FXYD2P54710 66 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 HHLA3Q9XRX5 114 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 A0A1W2PPM0 123 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 DNAJC30Q96LL9 226 aa7.97□□□□□ -1.13
CLIP1-213ENST00000540338 TMEM238C9JI98 176 aa7.96□□□□□ -1.13
CLIP1-213ENST00000540338 K7ERJ3 54 aa7.96□□□□□ -1.13
CLIP1-213ENST00000540338 SETD2Q9BYW2 2564 aaPredicted RBP7.96□□□□□ -1.13
CLIP1-213ENST00000540338 Q8N2B8 174 aa7.96□□□□□ -1.13
CLIP1-213ENST00000540338 FGF6P10767 208 aa7.96□□□□□ -1.14
CLIP1-213ENST00000540338 ZMAT4Q9H898 229 aa7.96□□□□□ -1.14
CLIP1-213ENST00000540338 ABCA2Q9BZC7 2435 aa7.96□□□□□ -1.14
CLIP1-213ENST00000540338 IGKV3OR2-268A0A0C4DH90 116 aa7.96□□□□□ -1.14
CLIP1-213ENST00000540338 K7EP34 96 aa7.96□□□□□ -1.14
CLIP1-213ENST00000540338 SFTA2Q6UW10 78 aa7.96□□□□□ -1.14
CLIP1-213ENST00000540338 LRBAP50851 2863 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 GAGE12JA6NER3 117 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 GAGE4Q13068 117 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 GAGE5Q13069 117 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 C21orf62-AS1Q17RA5 79 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 C12orf74Q32Q52 190 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 GAGE13Q4V321 117 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 ADARB2-AS1A8MUL3 147 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 PGPEP1Q9NXJ5 209 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 GAGE7O76087 117 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 GAGE12FP0CL80 117 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 GAGE12GP0CL81 117 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 GAGE12IP0CL82 117 aa7.95□□□□□ -1.14
CLIP1-213ENST00000540338 A0A0J9YXV3 536 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 LINC01006Q8NI28 216 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 NOP10Q9NPE3 64 aaKnown RBP7.94□□□□□ -1.14
CLIP1-213ENST00000540338 SPANXA1Q9NS26 97 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 ASPMQ8IZT6 3477 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 PLA2G2AP14555 144 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 MEIG1Q5JSS6 88 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 OPRPNQ99935 248 aaPredicted RBP7.94□□□□□ -1.14
CLIP1-213ENST00000540338 COX6CP09669 75 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 P0DMU3 169 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 FAM231AP0DMU4 169 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 FAM231CP0DMU5 169 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 RIPPLY3P57055 190 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 RNASE13Q5GAN3 156 aaKnown RBP7.94□□□□□ -1.14
CLIP1-213ENST00000540338 MAPKAPK5-AS1Q8N8E1 139 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 KIF25-AS1Q9Y6Z4 181 aa7.94□□□□□ -1.14
CLIP1-213ENST00000540338 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.94□□□□□ -1.14
CLIP1-213ENST00000540338 IGKV2-29A2NJV5 120 aaPredicted RBP7.94□□□□□ -1.14
CLIP1-213ENST00000540338 RNASE1P07998 156 aaKnown RBP7.94□□□□□ -1.14
CLIP1-213ENST00000540338 CENPEQ02224 2701 aa7.93□□□□□ -1.14
CLIP1-213ENST00000540338 AMTNQ6UX39 209 aa7.93□□□□□ -1.14
CLIP1-213ENST00000540338 COPS9Q8WXC6 57 aa7.93□□□□□ -1.14
CLIP1-213ENST00000540338 LAMA5O15230 3695 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 A0A1B0GWB2 263 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 TMEM262E9PQX1 116 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 LEPROTO15243 131 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 CHCHD5Q9BSY4 110 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 NACAE9PAV3 2078 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.92□□□□□ -1.14
CLIP1-213ENST00000540338 TRAV13-1A0A0B4J241 112 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 PRM2P04554 102 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 DEFB130BP0DP73 79 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 DEFB130AP0DP74 79 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 C2CD3Q4AC94 2353 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 IGSF10Q6WRI0 2623 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 PROK1P58294 105 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 TM2D2Q9BX73 214 aa7.92□□□□□ -1.14
CLIP1-213ENST00000540338 LINC00315P59091 139 aa7.91□□□□□ -1.14
CLIP1-213ENST00000540338 OCIAD2Q56VL3 154 aa7.91□□□□□ -1.14
CLIP1-213ENST00000540338 CFAP126Q5VTH2 177 aa7.91□□□□□ -1.14
CLIP1-213ENST00000540338 MORN3Q6PF18 240 aaPredicted RBP7.91□□□□□ -1.14
CLIP1-213ENST00000540338 ZNF575Q86XF7 245 aa7.91□□□□□ -1.14
CLIP1-213ENST00000540338 C16orf74Q96GX8 76 aa7.91□□□□□ -1.14
CLIP1-213ENST00000540338 ERG28Q9UKR5 140 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms