RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 MYO18BQ8IUG5 2567 aa9.77□□□□□ -0.84
MSH6-210ENST00000540021 IGHV3-53P01767 116 aa9.77□□□□□ -0.85
MSH6-210ENST00000540021 Q8N6K4 173 aa9.77□□□□□ -0.85
MSH6-210ENST00000540021 SMG1Q96Q15 3661 aaKnown RBP9.77□□□□□ -0.85
MSH6-210ENST00000540021 TRAV13-1A0A0B4J241 112 aa9.77□□□□□ -0.85
MSH6-210ENST00000540021 C11orf44Q8N8P7 122 aa9.77□□□□□ -0.85
MSH6-210ENST00000540021 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.76□□□□□ -0.85
MSH6-210ENST00000540021 IGKV2-29A2NJV5 120 aaPredicted RBP9.76□□□□□ -0.85
MSH6-210ENST00000540021 P0DMU3 169 aa9.76□□□□□ -0.85
MSH6-210ENST00000540021 FAM231AP0DMU4 169 aa9.76□□□□□ -0.85
MSH6-210ENST00000540021 FAM231CP0DMU5 169 aa9.76□□□□□ -0.85
MSH6-210ENST00000540021 RNASE3P12724 160 aaKnown RBP9.76□□□□□ -0.85
MSH6-210ENST00000540021 IGF2-ASQ6U949 168 aa9.76□□□□□ -0.85
MSH6-210ENST00000540021 TEX49A0A1B0GTD5 131 aa9.76□□□□□ -0.85
MSH6-210ENST00000540021 DEFB131AP59861 70 aa9.76□□□□□ -0.85
MSH6-210ENST00000540021 LINC01620Q4KN68 170 aa9.76□□□□□ -0.85
MSH6-210ENST00000540021 C19orf54Q5BKX5 351 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 COX8CQ7Z4L0 72 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 CARD19Q96LW7 228 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 ZZEF1O43149 2961 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 TRGV11A0A075B6L2 103 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 EDN2P20800 178 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 CLEC2BQ92478 149 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 IFITM1P13164 125 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 TSPEAR-AS2P59090 65 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 TCTEX1D4Q5JR98 221 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 SLC25A29Q8N8R3 303 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 LEPROTO15243 131 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 GAGE5Q13069 117 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 GAGE6Q13070 117 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 EBI3Q14213 229 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 ZNRF2Q8NHG8 242 aa9.75□□□□□ -0.85
MSH6-210ENST00000540021 CRIP2P52943 208 aaPredicted RBP9.74□□□□□ -0.85
MSH6-210ENST00000540021 UCNP55089 124 aa9.74□□□□□ -0.85
MSH6-210ENST00000540021 NAV2Q8IVL1 2488 aa9.74□□□□□ -0.85
MSH6-210ENST00000540021 ATP6V0E2Q8NHE4 81 aa9.74□□□□□ -0.85
MSH6-210ENST00000540021 A8MZ25 164 aa9.74□□□□□ -0.85
MSH6-210ENST00000540021 TIMM17AQ99595 171 aa9.74□□□□□ -0.85
MSH6-210ENST00000540021 PRSS47A8MTI9 375 aa9.73□□□□□ -0.85
MSH6-210ENST00000540021 IGHV3-30P01768 117 aa9.73□□□□□ -0.85
MSH6-210ENST00000540021 IGHV3-30-5P0DP03 117 aa9.73□□□□□ -0.85
MSH6-210ENST00000540021 OR13C6PQ8NH95 151 aa9.73□□□□□ -0.85
MSH6-210ENST00000540021 CENPEQ02224 2701 aa9.73□□□□□ -0.85
MSH6-210ENST00000540021 IGHV4-61A0A0C4DH41 118 aa9.73□□□□□ -0.85
MSH6-210ENST00000540021 UBE2E2Q96LR5 201 aa9.73□□□□□ -0.85
MSH6-210ENST00000540021 RHODO00212 210 aa9.73□□□□□ -0.85
MSH6-210ENST00000540021 UBE2L6O14933 153 aa9.73□□□□□ -0.85
MSH6-210ENST00000540021 RNASE1P07998 156 aaKnown RBP9.73□□□□□ -0.85
MSH6-210ENST00000540021 ZNF580Q9UK33 172 aa9.73□□□□□ -0.85
MSH6-210ENST00000540021 GAGE12JA6NER3 117 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 GAGE7O76087 117 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 GAGE12FP0CL80 117 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 GAGE12GP0CL81 117 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 GAGE12IP0CL82 117 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 GAGE4Q13068 117 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 PRM2P04554 102 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 PSMG3-AS1Q96PY0 264 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 RS1O15537 224 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 DNAL4O96015 105 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 IGHV3-30-3P0DP02 117 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 SMCPP49901 116 aaPredicted RBP9.72□□□□□ -0.85
MSH6-210ENST00000540021 YAE1D1Q9NRH1 226 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 ZNF292O60281 2723 aa9.72□□□□□ -0.85
MSH6-210ENST00000540021 A0A1W2PRX2 142 aa9.71□□□□□ -0.85
MSH6-210ENST00000540021 GNLYP22749 145 aa9.71□□□□□ -0.85
MSH6-210ENST00000540021 UBE2D1P51668 147 aa9.71□□□□□ -0.85
MSH6-210ENST00000540021 PRIMA1Q86XR5 153 aa9.71□□□□□ -0.85
MSH6-210ENST00000540021 IGHV4-4A0A075B6R2 117 aa9.71□□□□□ -0.86
MSH6-210ENST00000540021 LMO4P61968 165 aa9.71□□□□□ -0.86
MSH6-210ENST00000540021 SMIM20Q8N5G0 67 aa9.71□□□□□ -0.86
MSH6-210ENST00000540021 DEFB136Q30KP8 78 aa9.71□□□□□ -0.86
MSH6-210ENST00000540021 NOTCH2Q04721 2471 aa9.71□□□□□ -0.86
MSH6-210ENST00000540021 PROK1P58294 105 aa9.7□□□□□ -0.86
MSH6-210ENST00000540021 C20orf203Q8NBC4 194 aa9.7□□□□□ -0.86
MSH6-210ENST00000540021 PRO0461Q9UI25 63 aa9.7□□□□□ -0.86
MSH6-210ENST00000540021 ABCA2Q9BZC7 2435 aa9.7□□□□□ -0.86
MSH6-210ENST00000540021 IGHV3-33P01772 117 aa9.7□□□□□ -0.86
MSH6-210ENST00000540021 FN1P02751 2386 aaKnown RBP9.7□□□□□ -0.86
MSH6-210ENST00000540021 IGLV4-69A0A075B6H9 119 aa9.7□□□□□ -0.86
MSH6-210ENST00000540021 TRGV1A0A0A0MS02 117 aa9.7□□□□□ -0.86
MSH6-210ENST00000540021 ZNF22P17026 224 aaPredicted RBP9.7□□□□□ -0.86
MSH6-210ENST00000540021 C10orf99Q6UWK7 81 aa9.7□□□□□ -0.86
MSH6-210ENST00000540021 CDIP1Q9H305 208 aa9.7□□□□□ -0.86
MSH6-210ENST00000540021 ICOSQ9Y6W8 199 aa9.7□□□□□ -0.86
MSH6-210ENST00000540021 PRRC2AP48634 2157 aaKnown RBP9.69□□□□□ -0.86
MSH6-210ENST00000540021 TRAV4A0A0B4J268 109 aa9.69□□□□□ -0.86
MSH6-210ENST00000540021 IGHV4-59P01825 116 aa9.69□□□□□ -0.86
MSH6-210ENST00000540021 RHOHQ15669 191 aa9.69□□□□□ -0.86
MSH6-210ENST00000540021 GPHB5Q86YW7 130 aa9.69□□□□□ -0.86
MSH6-210ENST00000540021 XCL2Q9UBD3 114 aa9.69□□□□□ -0.86
MSH6-210ENST00000540021 TRBV7-9A0A0J9YWB2 115 aa9.69□□□□□ -0.86
MSH6-210ENST00000540021 A0A0J9YXY3 114 aa9.69□□□□□ -0.86
MSH6-210ENST00000540021 C11orf68Q9H3H3 251 aaKnown RBP9.69□□□□□ -0.86
MSH6-210ENST00000540021 CRYGDP07320 174 aa9.69□□□□□ -0.86
MSH6-210ENST00000540021 Q6ZSV7 163 aa9.69□□□□□ -0.86
MSH6-210ENST00000540021 IGIPA6NJ69 53 aa9.68□□□□□ -0.86
MSH6-210ENST00000540021 GATA3P23771 443 aa9.68□□□□□ -0.86
MSH6-210ENST00000540021 JMJD1CQ15652 2540 aa9.68□□□□□ -0.86
MSH6-210ENST00000540021 A0A1W2PPR1 153 aa9.68□□□□□ -0.86
MSH6-210ENST00000540021 TRIAP1O43715 76 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms