RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CEMP1Q6PRD7 247 aaPredicted RBP10.56□□□□□ -0.72
LIG1-203ENST00000536218 NDUFA7O95182 113 aa10.55□□□□□ -0.72
LIG1-203ENST00000536218 ORMDL2Q53FV1 153 aa10.55□□□□□ -0.72
LIG1-203ENST00000536218 NAV2Q8IVL1 2488 aa10.55□□□□□ -0.72
LIG1-203ENST00000536218 C14orf178Q8N769 122 aaPredicted RBP10.55□□□□□ -0.72
LIG1-203ENST00000536218 H3BUX3 64 aa10.55□□□□□ -0.72
LIG1-203ENST00000536218 TSPEAR-AS2P59090 65 aa10.55□□□□□ -0.72
LIG1-203ENST00000536218 PDE6HQ13956 83 aa10.55□□□□□ -0.72
LIG1-203ENST00000536218 TOMM6Q96B49 74 aa10.55□□□□□ -0.72
LIG1-203ENST00000536218 SLC25A29Q8N8R3 303 aa10.54□□□□□ -0.72
LIG1-203ENST00000536218 RPL39LQ96EH5 51 aaKnown RBP10.54□□□□□ -0.72
LIG1-203ENST00000536218 TMEM101Q96IK0 257 aa10.54□□□□□ -0.72
LIG1-203ENST00000536218 IGKV3D-20A0A0C4DH25 116 aa10.54□□□□□ -0.72
LIG1-203ENST00000536218 TRBV10-2A0A0K0K1G8 114 aa10.54□□□□□ -0.72
LIG1-203ENST00000536218 AVPP01185 164 aa10.54□□□□□ -0.72
LIG1-203ENST00000536218 MSMBP08118 114 aa10.54□□□□□ -0.72
LIG1-203ENST00000536218 ZNF22P17026 224 aaPredicted RBP10.54□□□□□ -0.72
LIG1-203ENST00000536218 RBAKDNA6NC62 111 aa10.53□□□□□ -0.72
LIG1-203ENST00000536218 PRAC2D3DTV9 90 aa10.53□□□□□ -0.72
LIG1-203ENST00000536218 J3KT08 172 aa10.53□□□□□ -0.72
LIG1-203ENST00000536218 MOB4Q9Y3A3 225 aa10.53□□□□□ -0.72
LIG1-203ENST00000536218 IGHV3-64A0A075B6Q5 118 aa10.53□□□□□ -0.72
LIG1-203ENST00000536218 CCDC140Q96MF4 163 aa10.53□□□□□ -0.72
LIG1-203ENST00000536218 C11orf21Q9P2W6 132 aa10.53□□□□□ -0.72
LIG1-203ENST00000536218 TRAV41A0A0B4J266 112 aa10.53□□□□□ -0.72
LIG1-203ENST00000536218 LGALS3P17931 250 aaKnown RBP10.53□□□□□ -0.72
LIG1-203ENST00000536218 RPL13AP40429 203 aaKnown RBP10.53□□□□□ -0.72
LIG1-203ENST00000536218 SUMO2P61956 95 aaKnown RBP10.53□□□□□ -0.72
LIG1-203ENST00000536218 BLCAPP62952 87 aa10.53□□□□□ -0.72
LIG1-203ENST00000536218 M0R381 172 aa10.52□□□□□ -0.73
LIG1-203ENST00000536218 MGPP08493 103 aa10.52□□□□□ -0.73
LIG1-203ENST00000536218 RNF182Q8N6D2 247 aa10.52□□□□□ -0.73
LIG1-203ENST00000536218 SMAD5-AS1Q9Y6J3 95 aa10.52□□□□□ -0.73
LIG1-203ENST00000536218 FBN2P35556 2912 aa10.52□□□□□ -0.73
LIG1-203ENST00000536218 EIF4EBP3O60516 100 aaPredicted RBP10.52□□□□□ -0.73
LIG1-203ENST00000536218 SETD2Q9BYW2 2564 aaPredicted RBP10.52□□□□□ -0.73
LIG1-203ENST00000536218 IGHV3-11P01762 117 aa10.51□□□□□ -0.73
LIG1-203ENST00000536218 MUSTN1Q8IVN3 82 aa10.51□□□□□ -0.73
LIG1-203ENST00000536218 C3orf22Q8N5N4 141 aa10.51□□□□□ -0.73
LIG1-203ENST00000536218 TRAV25A0A0B4J276 109 aa10.51□□□□□ -0.73
LIG1-203ENST00000536218 TMEM263Q8WUH6 116 aaKnown RBP10.51□□□□□ -0.73
LIG1-203ENST00000536218 EEF1AKMT3Q96AZ1 226 aa10.51□□□□□ -0.73
LIG1-203ENST00000536218 TRIAP1O43715 76 aa10.5□□□□□ -0.73
LIG1-203ENST00000536218 COX8CQ7Z4L0 72 aa10.5□□□□□ -0.73
LIG1-203ENST00000536218 ZNF843Q8N446 348 aa10.5□□□□□ -0.73
LIG1-203ENST00000536218 J3QQQ9 107 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 P0DMU3 169 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 FAM231AP0DMU4 169 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 FAM231CP0DMU5 169 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 TMEM190Q8WZ59 177 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 B4DSR2 109 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 M0R2P5 195 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 PRSS2P07478 247 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 ZNF256Q9Y2P7 627 aaPredicted RBP10.49□□□□□ -0.73
LIG1-203ENST00000536218 H7C423 109 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 TRBV12-3P01733 135 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 OR13C6PQ8NH95 151 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 ZFAND3Q9H8U3 227 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 CREBBPQ92793 2442 aa10.49□□□□□ -0.73
LIG1-203ENST00000536218 CRYGDP07320 174 aa10.48□□□□□ -0.73
LIG1-203ENST00000536218 KRTAP10-9P60411 292 aa10.48□□□□□ -0.73
LIG1-203ENST00000536218 CLEC2BQ92478 149 aa10.48□□□□□ -0.73
LIG1-203ENST00000536218 CCDC168Q8NDH2 2452 aa10.48□□□□□ -0.73
LIG1-203ENST00000536218 BUB3O43684 328 aa10.48□□□□□ -0.73
LIG1-203ENST00000536218 IGHG4P01861 327 aa10.48□□□□□ -0.73
LIG1-203ENST00000536218 IGLV4-69A0A075B6H9 119 aa10.47□□□□□ -0.73
LIG1-203ENST00000536218 GAGE2AQ6NT46 116 aa10.47□□□□□ -0.73
LIG1-203ENST00000536218 TRBV7-7A0A0K0K1E9 115 aa10.47□□□□□ -0.73
LIG1-203ENST00000536218 CLPSL1A2RUU4 121 aa10.47□□□□□ -0.73
LIG1-203ENST00000536218 TP53TG1Q9Y2A0 90 aa10.47□□□□□ -0.73
LIG1-203ENST00000536218 IGKV3-7A0A075B6H7 116 aa10.47□□□□□ -0.73
LIG1-203ENST00000536218 IGHV7-4-1A0A0J9YVY3 117 aa10.47□□□□□ -0.73
LIG1-203ENST00000536218 UQCRQO14949 82 aa10.47□□□□□ -0.73
LIG1-203ENST00000536218 LRRC75A-AS1Q8N1F1 130 aa10.47□□□□□ -0.73
LIG1-203ENST00000536218 METTL26Q96S19 204 aa10.47□□□□□ -0.73
LIG1-203ENST00000536218 TRBV7-1A0A0A6YYK4 115 aa10.46□□□□□ -0.73
LIG1-203ENST00000536218 SLC50A1Q9BRV3 221 aa10.46□□□□□ -0.73
LIG1-203ENST00000536218 RNF223E7ERA6 249 aa10.46□□□□□ -0.74
LIG1-203ENST00000536218 RPL39P62891 51 aaKnown RBP10.46□□□□□ -0.74
LIG1-203ENST00000536218 SRSF2Q01130 221 aaKnown RBP10.46□□□□□ -0.74
LIG1-203ENST00000536218 SONP18583 2426 aaKnown RBP10.46□□□□□ -0.74
LIG1-203ENST00000536218 TRAV8-3A0A0A6YYJ7 113 aa10.45□□□□□ -0.74
LIG1-203ENST00000536218 NPC2P61916 151 aa10.45□□□□□ -0.74
LIG1-203ENST00000536218 ADARB2-AS1A8MUL3 147 aa10.45□□□□□ -0.74
LIG1-203ENST00000536218 S100A4P26447 101 aaKnown RBP10.45□□□□□ -0.74
LIG1-203ENST00000536218 A0A0B4J2C4 111 aa10.45□□□□□ -0.74
LIG1-203ENST00000536218 A6NDX4 124 aa10.45□□□□□ -0.74
LIG1-203ENST00000536218 UNQ9165/PRO28630Q6UXU0 137 aa10.45□□□□□ -0.74
LIG1-203ENST00000536218 POM121L12Q8N7R1 296 aa10.45□□□□□ -0.74
LIG1-203ENST00000536218 AGPAT4-IT1Q9H0P7 198 aa10.45□□□□□ -0.74
LIG1-203ENST00000536218 IGHV4-59P01825 116 aa10.44□□□□□ -0.74
LIG1-203ENST00000536218 PAPPA-AS1Q5QFB9 102 aa10.44□□□□□ -0.74
LIG1-203ENST00000536218 PSMG3-AS1Q96PY0 264 aa10.44□□□□□ -0.74
LIG1-203ENST00000536218 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.44□□□□□ -0.74
LIG1-203ENST00000536218 RPL11P62913 178 aaKnown RBP10.44□□□□□ -0.74
LIG1-203ENST00000536218 DEFB112Q30KQ8 113 aa10.44□□□□□ -0.74
LIG1-203ENST00000536218 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.44□□□□□ -0.74
LIG1-203ENST00000536218 ZNRF2Q8NHG8 242 aa10.44□□□□□ -0.74
LIG1-203ENST00000536218 TSHBP01222 138 aa10.43□□□□□ -0.74
LIG1-203ENST00000536218 COX6CP09669 75 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms