RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 SSX1Q16384 188 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 IQCJQ1A5X6 159 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 Q56UQ5 140 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 KHDC3LQ587J8 217 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 RPL39P5Q59GN2 51 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 NIT1Q86X76 327 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.56□□□□□ -2.16
SYNE1-232ENST00000535081 ZNF555Q8NEP9 628 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 GPR146Q96CH1 333 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 ADTRPQ96IZ2 230 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 SIGMAR1Q99720 223 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 MIEN1Q9BRT3 115 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 TMEM70Q9BUB7 260 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 PBDC1Q9BVG4 233 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 ACOT13Q9NPJ3 140 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.56□□□□□ -2.16
SYNE1-232ENST00000535081 LYRM2Q9NU23 88 aaPredicted RBP1.56□□□□□ -2.16
SYNE1-232ENST00000535081 DOK5Q9P104 306 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 CKLFQ9UBR5 152 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 V9GYH0 126 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 VPS13DQ5THJ4 4388 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 PKD1P98161 4303 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 TRAV2A0A0B4J234 112 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 TRAV8-4A0A0B4J246 113 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 IGKV1-9A0A0C4DH69 117 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 A0A0D9SG52 128 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 OR2T8A6NH00 312 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 F5H768 121 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 G3V3Q6 166 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 FXYD1O00168 92 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 IFNA1P01562 189 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 P01737 135 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 IGKV1-16P04430 117 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ISG15P05161 165 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ATP5G1P05496 136 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 OR5G3P0C626 314 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 SEC11BP0C7V7 166 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ESDP10768 282 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 FABP4P15090 132 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 CXCL2P19875 107 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 GADD45AP24522 165 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 PSMA1P25786 263 aaKnown RBP1.55□□□□□ -2.16
SYNE1-232ENST00000535081 OR10J1P30954 320 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 FUSP35637 526 aaKnown RBP eCLIP1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ZNF93P35789 620 aaPredicted RBP1.55□□□□□ -2.16
SYNE1-232ENST00000535081 RPL27AP46776 148 aaKnown RBP1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ATP5G3P48201 142 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 INPP1P49441 399 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 DEFB131AP59861 70 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 MLLT11Q13015 90 aaPredicted RBP1.55□□□□□ -2.16
SYNE1-232ENST00000535081 KRTAP13-4Q3LI77 160 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 TMEM128Q5BJH2 165 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ACTL10Q5JWF8 245 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 FAM78BQ5VT40 261 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 OR10K2Q6IF99 312 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 RPL22L1Q6P5R6 122 aaKnown RBP1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ALKAL2Q6UX46 152 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ZNF705AQ6ZN79 300 aaPredicted RBP1.55□□□□□ -2.16
SYNE1-232ENST00000535081 SYS1Q8N2H4 156 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 SMIM20Q8N5G0 67 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 Q8NDZ9 215 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 OR4C16Q8NGL9 310 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 OR2T35Q8NGX2 323 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 OR5AK2Q8NH90 309 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ZNRF2Q8NHG8 242 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 CANT1Q8WVQ1 401 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ADAT3Q96EY9 351 aaPredicted RBP1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ABHD14BQ96IU4 210 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 TBX5Q99593 518 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BLQ99880 126 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 RHPN1-AS1Q9BWJ2 59 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 MAP1LC3CQ9BXW4 147 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 COMMD5Q9GZQ3 224 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 SLC25A31Q9H0C2 315 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 OR51E2Q9H255 320 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 UQCC1Q9NVA1 299 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 TVP23BQ9NYZ1 205 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 OR5AC2Q9NZP5 309 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 SS18L2Q9UHA2 77 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 NAT8Q9UHE5 227 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 VAX2Q9UIW0 290 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 C14orf166Q9Y224 244 aaKnown RBP1.55□□□□□ -2.16
SYNE1-232ENST00000535081 ORC6Q9Y5N6 252 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 OR51B2Q9Y5P1 312 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 DNAH2Q9P225 4427 aa1.55□□□□□ -2.16
SYNE1-232ENST00000535081 FAT2Q9NYQ8 4349 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 DNAH17Q9UFH2 4485 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 LOC100130705A0A1B0GUX0 176 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 DAPL1A0PJW8 107 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 SDHAF1A6NFY7 115 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 TMEM212A6NML5 194 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 IFITM5A6NNB3 132 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 CDS2O95674 445 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 TYMSP04818 313 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 SDC2P34741 201 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 TAS2R30P59541 319 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 S100A10P60903 97 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 ST3GAL4Q11206 333 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 DHRS2Q13268 280 aa1.54□□□□□ -2.16
SYNE1-232ENST00000535081 RRN3P1Q2M238 152 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms