RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 GAGE5Q13069 117 aa8.24□□□□□ -1.09
TRIM3-211ENST00000532542 ODF1Q14990 250 aa8.24□□□□□ -1.09
TRIM3-211ENST00000532542 GAGE13Q4V321 117 aa8.24□□□□□ -1.09
TRIM3-211ENST00000532542 C9orf85Q96MD7 179 aa8.24□□□□□ -1.09
TRIM3-211ENST00000532542 SCRT2Q9NQ03 307 aa8.24□□□□□ -1.09
TRIM3-211ENST00000532542 PSMB2P49721 201 aa8.24□□□□□ -1.09
TRIM3-211ENST00000532542 ANKRD39Q53RE8 183 aa8.24□□□□□ -1.09
TRIM3-211ENST00000532542 FN1P02751 2386 aaKnown RBP8.24□□□□□ -1.09
TRIM3-211ENST00000532542 TMEM263Q8WUH6 116 aaKnown RBP8.23□□□□□ -1.09
TRIM3-211ENST00000532542 NHP2Q9NX24 153 aaKnown RBP8.23□□□□□ -1.09
TRIM3-211ENST00000532542 COPS9Q8WXC6 57 aa8.23□□□□□ -1.09
TRIM3-211ENST00000532542 SMR3AQ99954 134 aa8.23□□□□□ -1.09
TRIM3-211ENST00000532542 TIMM17AQ99595 171 aa8.23□□□□□ -1.09
TRIM3-211ENST00000532542 ESM1Q9NQ30 184 aa8.23□□□□□ -1.09
TRIM3-211ENST00000532542 IGHV3-38A0A0C4DH36 116 aa8.23□□□□□ -1.09
TRIM3-211ENST00000532542 J3QR89 54 aa8.22□□□□□ -1.09
TRIM3-211ENST00000532542 HTN3P15516 51 aa8.22□□□□□ -1.09
TRIM3-211ENST00000532542 RIPPLY3P57055 190 aa8.22□□□□□ -1.09
TRIM3-211ENST00000532542 FLNCQ14315 2725 aa8.22□□□□□ -1.09
TRIM3-211ENST00000532542 GAS8-AS1O95177 125 aa8.21□□□□□ -1.09
TRIM3-211ENST00000532542 RPL32P62910 135 aaKnown RBP8.21□□□□□ -1.09
TRIM3-211ENST00000532542 MEIG1Q5JSS6 88 aa8.21□□□□□ -1.09
TRIM3-211ENST00000532542 LURAP1LQ8IV03 231 aa8.21□□□□□ -1.09
TRIM3-211ENST00000532542 C2CD3Q4AC94 2353 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 IGHV3-64A0A075B6Q5 118 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 BAALCQ8WXS3 180 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 SPANXA1Q9NS26 97 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 TRBV25-1A0A075B6N4 114 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 TRBV6-5A0A0K0K1A5 114 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 MYMXA0A1B0GTQ4 84 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 H3BUT2 72 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 CIDEAO60543 219 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 FAM19A4Q96LR4 140 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 TIMM21Q9BVV7 248 aa8.21□□□□□ -1.1
TRIM3-211ENST00000532542 LOC107984156A0A0G2JMH3 177 aa8.2□□□□□ -1.1
TRIM3-211ENST00000532542 M0QY20 66 aa8.2□□□□□ -1.1
TRIM3-211ENST00000532542 RPL39P62891 51 aaKnown RBP8.2□□□□□ -1.1
TRIM3-211ENST00000532542 PCP2Q8IVA1 136 aa8.2□□□□□ -1.1
TRIM3-211ENST00000532542 ARL17AQ8IVW1 177 aa8.2□□□□□ -1.1
TRIM3-211ENST00000532542 ODF3L2Q3SX64 289 aa8.2□□□□□ -1.1
TRIM3-211ENST00000532542 Q8N976 141 aa8.2□□□□□ -1.1
TRIM3-211ENST00000532542 TMEM243Q9BU79 118 aa8.2□□□□□ -1.1
TRIM3-211ENST00000532542 TMEM238C9JI98 176 aa8.2□□□□□ -1.1
TRIM3-211ENST00000532542 BVES-AS1Q5T3Y7 98 aa8.2□□□□□ -1.1
TRIM3-211ENST00000532542 PIK3CD-AS1Q5SR53 167 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 C20orf203Q8NBC4 194 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 K7EQD1 137 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 DLEU1O43261 78 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 COX11Q9Y6N1 276 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 HECTD1Q9ULT8 2610 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 NXPH4O95158 308 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 CFAP46Q8IYW2 2715 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 TRBV10-1A0A0K0K1A3 114 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 TRBV27A0A0K0K1C4 114 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 APOMO95445 188 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 CRYGDP07320 174 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 DAZ2Q13117 558 aaKnown RBP8.19□□□□□ -1.1
TRIM3-211ENST00000532542 DAZ4Q86SG3 579 aaKnown RBP8.19□□□□□ -1.1
TRIM3-211ENST00000532542 BOD1L2Q8IYS8 172 aa8.19□□□□□ -1.1
TRIM3-211ENST00000532542 DAZ3Q9NR90 486 aaKnown RBP8.19□□□□□ -1.1
TRIM3-211ENST00000532542 NACAE9PAV3 2078 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 TRBV7-3A0A075B6L6 115 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 DAD1P61803 113 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 DEFB125Q8N687 156 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 TRAV13-1A0A0B4J241 112 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 PRSS47A8MTI9 375 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 TAL2Q16559 108 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 SPCS1Q9Y6A9 102 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 COX6CP09669 75 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 AMTNQ6UX39 209 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 CST9LQ9H4G1 147 aa8.18□□□□□ -1.1
TRIM3-211ENST00000532542 FLNAP21333 2647 aaKnown RBP8.18□□□□□ -1.1
TRIM3-211ENST00000532542 TRAV4A0A0B4J268 109 aa8.17□□□□□ -1.1
TRIM3-211ENST00000532542 RPL24P83731 157 aaKnown RBP8.17□□□□□ -1.1
TRIM3-211ENST00000532542 KRTAP1-3Q8IUG1 177 aa8.17□□□□□ -1.1
TRIM3-211ENST00000532542 MAP1AP78559 2803 aaPredicted RBP8.17□□□□□ -1.1
TRIM3-211ENST00000532542 IGLV1-51P01701 117 aa8.17□□□□□ -1.1
TRIM3-211ENST00000532542 POLR2KP53803 58 aaKnown RBP8.17□□□□□ -1.1
TRIM3-211ENST00000532542 RNF151Q2KHN1 245 aa8.17□□□□□ -1.1
TRIM3-211ENST00000532542 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.17□□□□□ -1.1
TRIM3-211ENST00000532542 IGKV2-29A2NJV5 120 aaPredicted RBP8.17□□□□□ -1.1
TRIM3-211ENST00000532542 TOMM7Q9P0U1 55 aa8.17□□□□□ -1.1
TRIM3-211ENST00000532542 H7C2G1 150 aa8.17□□□□□ -1.1
TRIM3-211ENST00000532542 CFAP126Q5VTH2 177 aa8.17□□□□□ -1.1
TRIM3-211ENST00000532542 CFAP47Q6ZTR5 3102 aa8.16□□□□□ -1.1
TRIM3-211ENST00000532542 J3QQQ9 107 aa8.16□□□□□ -1.1
TRIM3-211ENST00000532542 PROK1P58294 105 aa8.16□□□□□ -1.1
TRIM3-211ENST00000532542 KALRNO60229 2985 aa8.16□□□□□ -1.1
TRIM3-211ENST00000532542 CRLF1O75462 422 aa8.16□□□□□ -1.1
TRIM3-211ENST00000532542 VPS25Q9BRG1 176 aa8.16□□□□□ -1.1
TRIM3-211ENST00000532542 SAMD5Q5TGI4 173 aa8.16□□□□□ -1.1
TRIM3-211ENST00000532542 Q6ZTI0 123 aa8.16□□□□□ -1.1
TRIM3-211ENST00000532542 NEXN-AS1Q8NBZ9 246 aa8.16□□□□□ -1.1
TRIM3-211ENST00000532542 FHL3Q13643 280 aa8.15□□□□□ -1.1
TRIM3-211ENST00000532542 A0A096LNJ9 63 aa8.15□□□□□ -1.1
TRIM3-211ENST00000532542 K7ERU9 68 aa8.15□□□□□ -1.1
TRIM3-211ENST00000532542 ZNF479Q96JC4 524 aa8.15□□□□□ -1.1
TRIM3-211ENST00000532542 HIGD1BQ9P298 99 aa8.15□□□□□ -1.1
TRIM3-211ENST00000532542 RS1O15537 224 aa8.15□□□□□ -1.11
TRIM3-211ENST00000532542 P0DMU3 169 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 265.6 ms