RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 MIAQ16674 131 aa10.56□□□□□ -0.72
HIF3A-208ENST00000524533 BAGE2Q86Y30 109 aa10.56□□□□□ -0.72
HIF3A-208ENST00000524533 MLST8Q9BVC4 326 aa10.56□□□□□ -0.72
HIF3A-208ENST00000524533 UMAD1C9J7I0 102 aa10.55□□□□□ -0.72
HIF3A-208ENST00000524533 SMLR1H3BR10 107 aa10.55□□□□□ -0.72
HIF3A-208ENST00000524533 TMEM97Q5BJF2 176 aa10.55□□□□□ -0.72
HIF3A-208ENST00000524533 MBD3L1Q8WWY6 194 aa10.55□□□□□ -0.72
HIF3A-208ENST00000524533 SSBP4Q9BWG4 385 aaPredicted RBP10.55□□□□□ -0.72
HIF3A-208ENST00000524533 SMIM17P0DL12 118 aa10.54□□□□□ -0.72
HIF3A-208ENST00000524533 SSTP61278 116 aa10.54□□□□□ -0.72
HIF3A-208ENST00000524533 ZNF345Q14585 488 aa10.54□□□□□ -0.72
HIF3A-208ENST00000524533 KCNRGQ8N5I3 272 aa10.54□□□□□ -0.72
HIF3A-208ENST00000524533 AP1S3Q96PC3 154 aa10.54□□□□□ -0.72
HIF3A-208ENST00000524533 VAX2Q9UIW0 290 aa10.54□□□□□ -0.72
HIF3A-208ENST00000524533 OXTP01178 125 aa10.53□□□□□ -0.72
HIF3A-208ENST00000524533 RGS21Q2M5E4 152 aa10.53□□□□□ -0.72
HIF3A-208ENST00000524533 CLPSL2Q6UWE3 100 aa10.53□□□□□ -0.72
HIF3A-208ENST00000524533 NTM-AS1Q6ZSK4 140 aa10.53□□□□□ -0.72
HIF3A-208ENST00000524533 DERL1Q9BUN8 251 aa10.53□□□□□ -0.72
HIF3A-208ENST00000524533 LRP1Q07954 4544 aaKnown RBP10.53□□□□□ -0.72
HIF3A-208ENST00000524533 TRBV25-1A0A075B6N4 114 aa10.52□□□□□ -0.73
HIF3A-208ENST00000524533 PRSS1P07477 247 aa10.52□□□□□ -0.73
HIF3A-208ENST00000524533 RPL37AP61513 92 aaKnown RBP10.52□□□□□ -0.73
HIF3A-208ENST00000524533 RBX1P62877 108 aa10.52□□□□□ -0.73
HIF3A-208ENST00000524533 GAGE6Q13070 117 aa10.52□□□□□ -0.73
HIF3A-208ENST00000524533 SERTAD4-AS1Q5TG53 156 aa10.52□□□□□ -0.73
HIF3A-208ENST00000524533 PRR34Q9NV39 138 aa10.52□□□□□ -0.73
HIF3A-208ENST00000524533 KIF25-AS1Q9Y6Z4 181 aa10.52□□□□□ -0.73
HIF3A-208ENST00000524533 H2AFB1P0C5Y9 115 aa10.51□□□□□ -0.73
HIF3A-208ENST00000524533 DGAT2L7PQ6IED9 249 aa10.51□□□□□ -0.73
HIF3A-208ENST00000524533 TMUB2Q71RG4 321 aa10.51□□□□□ -0.73
HIF3A-208ENST00000524533 LINC00269Q8N2A0 174 aa10.51□□□□□ -0.73
HIF3A-208ENST00000524533 PKHD1L1Q86WI1 4243 aa10.51□□□□□ -0.73
HIF3A-208ENST00000524533 KANTRA0A1W2PQU2 76 aa10.5□□□□□ -0.73
HIF3A-208ENST00000524533 BCL2L11O43521 198 aa10.5□□□□□ -0.73
HIF3A-208ENST00000524533 MGPP08493 103 aa10.5□□□□□ -0.73
HIF3A-208ENST00000524533 RPL35P42766 123 aaKnown RBP10.5□□□□□ -0.73
HIF3A-208ENST00000524533 FAT3Q8TDW7 4589 aa10.5□□□□□ -0.73
HIF3A-208ENST00000524533 IGHV1-24A0A0C4DH33 117 aa10.49□□□□□ -0.73
HIF3A-208ENST00000524533 IQCJQ1A5X6 159 aa10.49□□□□□ -0.73
HIF3A-208ENST00000524533 C9orf163Q8N9P6 203 aa10.49□□□□□ -0.73
HIF3A-208ENST00000524533 TPPP3Q9BW30 176 aa10.49□□□□□ -0.73
HIF3A-208ENST00000524533 A0A0D9SG52 128 aa10.48□□□□□ -0.73
HIF3A-208ENST00000524533 H7C1H1 209 aa10.48□□□□□ -0.73
HIF3A-208ENST00000524533 KRTAP26-1Q6PEX3 210 aa10.48□□□□□ -0.73
HIF3A-208ENST00000524533 MANBALQ9NQG1 85 aa10.48□□□□□ -0.73
HIF3A-208ENST00000524533 HMCN2Q8NDA2 5059 aa10.48□□□□□ -0.73
HIF3A-208ENST00000524533 HMSDA8MTL9 139 aa10.47□□□□□ -0.73
HIF3A-208ENST00000524533 M0QY20 66 aa10.47□□□□□ -0.73
HIF3A-208ENST00000524533 GZMBP10144 247 aa10.47□□□□□ -0.73
HIF3A-208ENST00000524533 REG3AQ06141 175 aa10.47□□□□□ -0.73
HIF3A-208ENST00000524533 CENPWQ5EE01 88 aa10.47□□□□□ -0.73
HIF3A-208ENST00000524533 SUMO4Q6EEV6 95 aa10.47□□□□□ -0.73
HIF3A-208ENST00000524533 FER1L6-AS1Q8NA97 138 aa10.47□□□□□ -0.73
HIF3A-208ENST00000524533 C11orf52Q96A22 123 aa10.47□□□□□ -0.73
HIF3A-208ENST00000524533 GNG13Q9P2W3 67 aa10.47□□□□□ -0.73
HIF3A-208ENST00000524533 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.47□□□□□ -0.73
HIF3A-208ENST00000524533 IGLV10-54A0A075B6I4 117 aa10.46□□□□□ -0.73
HIF3A-208ENST00000524533 IGLC6P0CF74 106 aa10.46□□□□□ -0.73
HIF3A-208ENST00000524533 RPS20P60866 119 aaKnown RBP10.46□□□□□ -0.73
HIF3A-208ENST00000524533 EIF5AP63241 154 aaKnown RBP10.46□□□□□ -0.73
HIF3A-208ENST00000524533 OR2D3Q8NGH3 330 aa10.46□□□□□ -0.73
HIF3A-208ENST00000524533 DAZAP1Q96EP5 407 aaKnown RBP10.46□□□□□ -0.73
HIF3A-208ENST00000524533 HNRNPA3P51991 378 aaKnown RBP10.45□□□□□ -0.74
HIF3A-208ENST00000524533 CLRN3Q8NCR9 226 aa10.45□□□□□ -0.74
HIF3A-208ENST00000524533 PANO1I0J062 215 aa10.44□□□□□ -0.74
HIF3A-208ENST00000524533 NKX2-5P52952 324 aaPredicted RBP10.44□□□□□ -0.74
HIF3A-208ENST00000524533 CACNG7P62955 275 aa10.44□□□□□ -0.74
HIF3A-208ENST00000524533 TMEM243Q9BU79 118 aa10.44□□□□□ -0.74
HIF3A-208ENST00000524533 TRAV8-4A0A0B4J246 113 aa10.43□□□□□ -0.74
HIF3A-208ENST00000524533 hDV102S1A0JD36 115 aa10.43□□□□□ -0.74
HIF3A-208ENST00000524533 P01737 135 aa10.43□□□□□ -0.74
HIF3A-208ENST00000524533 CNBPP62633 177 aaKnown RBP10.43□□□□□ -0.74
HIF3A-208ENST00000524533 CCL20P78556 96 aa10.43□□□□□ -0.74
HIF3A-208ENST00000524533 RASL11AQ6T310 242 aa10.43□□□□□ -0.74
HIF3A-208ENST00000524533 SDIM1Q6ZPB5 146 aa10.43□□□□□ -0.74
HIF3A-208ENST00000524533 C20orf203Q8NBC4 194 aa10.43□□□□□ -0.74
HIF3A-208ENST00000524533 PLA2G2DQ9UNK4 145 aa10.43□□□□□ -0.74
HIF3A-208ENST00000524533 XKRY2A2RUG3 117 aa10.42□□□□□ -0.74
HIF3A-208ENST00000524533 C19orf71A6NCJ1 209 aa10.42□□□□□ -0.74
HIF3A-208ENST00000524533 TRGC1P0CF51 173 aa10.42□□□□□ -0.74
HIF3A-208ENST00000524533 GNG4P50150 75 aa10.42□□□□□ -0.74
HIF3A-208ENST00000524533 SMIM12Q96EX1 92 aa10.42□□□□□ -0.74
HIF3A-208ENST00000524533 IGLV4-60A0A075B6I1 120 aa10.41□□□□□ -0.74
HIF3A-208ENST00000524533 TRAV1-1A0A0B4J248 108 aa10.41□□□□□ -0.74
HIF3A-208ENST00000524533 A0A1B0GUV1 79 aa10.41□□□□□ -0.74
HIF3A-208ENST00000524533 RAB19A4D1S5 217 aa10.41□□□□□ -0.74
HIF3A-208ENST00000524533 F2Z2F3 143 aa10.41□□□□□ -0.74
HIF3A-208ENST00000524533 PGLYRP4Q96LB8 373 aa10.41□□□□□ -0.74
HIF3A-208ENST00000524533 DPH3P1Q9H4G8 78 aa10.41□□□□□ -0.74
HIF3A-208ENST00000524533 AP5S1Q9NUS5 200 aa10.41□□□□□ -0.74
HIF3A-208ENST00000524533 IGHV3-64A0A075B6Q5 118 aa10.4□□□□□ -0.74
HIF3A-208ENST00000524533 TEX46H3BTG2 121 aa10.4□□□□□ -0.74
HIF3A-208ENST00000524533 UBE2L6O14933 153 aa10.4□□□□□ -0.74
HIF3A-208ENST00000524533 CIRBPQ14011 172 aaKnown RBP10.4□□□□□ -0.74
HIF3A-208ENST00000524533 WDR73Q6P4I2 378 aa10.4□□□□□ -0.74
HIF3A-208ENST00000524533 LYZL1Q6UWQ5 148 aa10.4□□□□□ -0.74
HIF3A-208ENST00000524533 GFRA4Q9GZZ7 299 aa10.4□□□□□ -0.74
HIF3A-208ENST00000524533 NIT2Q9NQR4 276 aa10.4□□□□□ -0.74
HIF3A-208ENST00000524533 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms