RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 FXYD3Q14802 87 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 RTL8BQ17RB0 113 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.33□□□□□ -1.72
LSM1-202ENST00000520286 DOLPP1Q86YN1 238 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 MIR7-3HGQ8N6C7 128 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 GATD1Q8NB37 220 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 ST20-AS1Q8NBB2 130 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 NUP35Q8NFH5 326 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 OR10D3Q8NH80 312 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 ATP6V0E2Q8NHE4 81 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 GALMQ96C23 342 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 RNASE7Q9H1E1 156 aaKnown RBP4.33□□□□□ -1.72
LSM1-202ENST00000520286 TMEM133Q9H2Q1 129 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 LINC00574Q9H8X3 128 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 TMEM167BQ9NRX6 74 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 IDI2-AS1Q9NZ38 188 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 HIGD1BQ9P298 99 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 RABAC1Q9UI14 185 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 PRO0461Q9UI25 63 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 HSPB8Q9UJY1 196 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 NIPBLQ6KC79 2804 aaeCLIP4.32□□□□□ -1.72
LSM1-202ENST00000520286 ANKHD1Q8IWZ3 2542 aaKnown RBP4.32□□□□□ -1.72
LSM1-202ENST00000520286 CSMD2Q7Z408 3487 aa4.32□□□□□ -1.72
LSM1-202ENST00000520286 RP1L1Q8IWN7 2480 aaPredicted RBP4.32□□□□□ -1.72
LSM1-202ENST00000520286 COX7A2P2O60397 106 aa4.32□□□□□ -1.72
LSM1-202ENST00000520286 SPINK4O60575 86 aa4.32□□□□□ -1.72
LSM1-202ENST00000520286 FKBP2P26885 142 aaKnown RBP4.32□□□□□ -1.72
LSM1-202ENST00000520286 LGALS9BQ3B8N2 356 aa4.32□□□□□ -1.72
LSM1-202ENST00000520286 SPATA31B1PQ5VZV4 182 aa4.32□□□□□ -1.72
LSM1-202ENST00000520286 MIC13Q5XKP0 118 aa4.32□□□□□ -1.72
LSM1-202ENST00000520286 LGALS9CQ6DKI2 356 aa4.32□□□□□ -1.72
LSM1-202ENST00000520286 CCDC168Q8NDH2 2452 aa4.32□□□□□ -1.72
LSM1-202ENST00000520286 MED13LQ71F56 2210 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 CELSR1Q9NYQ6 3014 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 HIVEP3Q5T1R4 2406 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 PGPA6NDG6 321 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 GGTLC3B5MD39 225 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 C19orf84I3L1E1 186 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 APOA2P02652 100 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 CECR9P0C854 216 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 HLA-DRB4P13762 266 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 PRTN3P24158 256 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 HBBP68871 147 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 AESQ08117 197 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 PSMG4Q5JS54 123 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 SSX8Q7RTT4 187 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 SLC37A2Q8TED4 501 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 CYSLTR1Q9Y271 337 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 HILPDAQ9Y5L2 63 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 ZNF706Q9Y5V0 76 aaPredicted RBP4.31□□□□□ -1.72
LSM1-202ENST00000520286 HLA-DRB4X5D2U9 266 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 POLEQ07864 2286 aa4.31□□□□□ -1.72
LSM1-202ENST00000520286 TMEM213A2RRL7 107 aa4.3□□□□□ -1.72
LSM1-202ENST00000520286 LGALS9O00182 355 aa4.3□□□□□ -1.72
LSM1-202ENST00000520286 SYNGR1O43759 233 aa4.3□□□□□ -1.72
LSM1-202ENST00000520286 KLF7O75840 302 aaPredicted RBP4.3□□□□□ -1.72
LSM1-202ENST00000520286 SMIM13P0DJ93 91 aa4.3□□□□□ -1.72
LSM1-202ENST00000520286 G6PCP35575 357 aa4.3□□□□□ -1.72
LSM1-202ENST00000520286 MPV17P39210 176 aa4.3□□□□□ -1.72
LSM1-202ENST00000520286 RPL30P62888 115 aaKnown RBP4.3□□□□□ -1.72
LSM1-202ENST00000520286 CATR1Q13166 79 aa4.3□□□□□ -1.72
LSM1-202ENST00000520286 WFDC2Q14508 124 aa4.3□□□□□ -1.72
LSM1-202ENST00000520286 NAA38Q9BRA0 125 aaKnown RBP4.3□□□□□ -1.72
LSM1-202ENST00000520286 ZNF492Q9P255 531 aa4.3□□□□□ -1.72
LSM1-202ENST00000520286 UNC13CQ8NB66 2214 aa4.29□□□□□ -1.72
LSM1-202ENST00000520286 C17orf98A8MV24 154 aa4.29□□□□□ -1.72
LSM1-202ENST00000520286 NCR2O95944 276 aa4.29□□□□□ -1.72
LSM1-202ENST00000520286 MGST1P10620 155 aaKnown RBP4.29□□□□□ -1.72
LSM1-202ENST00000520286 TAS2R45P59539 299 aa4.29□□□□□ -1.72
LSM1-202ENST00000520286 FAM104BQ5XKR9 115 aa4.29□□□□□ -1.72
LSM1-202ENST00000520286 MIR17HGQ75NE6 70 aa4.29□□□□□ -1.72
LSM1-202ENST00000520286 ANAPC13Q9BS18 74 aa4.29□□□□□ -1.72
LSM1-202ENST00000520286 MRPL32Q9BYC8 188 aaKnown RBP4.29□□□□□ -1.72
LSM1-202ENST00000520286 OR2H1Q9GZK4 316 aa4.29□□□□□ -1.72
LSM1-202ENST00000520286 SS18L2Q9UHA2 77 aa4.29□□□□□ -1.72
LSM1-202ENST00000520286 MPC1Q9Y5U8 109 aa4.29□□□□□ -1.72
LSM1-202ENST00000520286 TRAV8-3A0A0A6YYJ7 113 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 TEX50A0A1B0GTY4 177 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 TCRBV4S1A1TA0A5B7 111 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 C19orf71A6NCJ1 209 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 HIGD1CA8MV81 97 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 IGLL5B9A064 214 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 SPINK8P0C7L1 97 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 FXYD2P54710 66 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 Q6ZUT4 128 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 RAB37Q96AX2 223 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 LINC01587Q99440 93 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 SPANXA1Q9NS26 97 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 MED12LQ86YW9 2145 aa4.28□□□□□ -1.72
LSM1-202ENST00000520286 A8MUU9 505 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 H3BMG7 143 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 IGHV1-46P01743 117 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 MT-ATP8P03928 68 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 SCGB1C2P0DMR2 95 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 CSN1S1P47710 185 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 INSL3P51460 131 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 PCBD1P61457 104 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 ETDBQ3ZM63 59 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 RPRMLQ8N4K4 120 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 OR10X1Q8NGY0 326 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms