RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 TVP23CQ96ET8 276 aa1.98□□□□□ -2.09
MCF2-208ENST00000519895 PARLQ9H300 379 aa1.98□□□□□ -2.09
MCF2-208ENST00000519895 SORL1Q92673 2214 aa1.98□□□□□ -2.09
MCF2-208ENST00000519895 H3BTX0 84 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 IGHV3-53P01767 116 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 TYMSP04818 313 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 KRTAP2-3P0C7H8 128 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 TRGC1P0CF51 173 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 GZMBP10144 247 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 UBE2G2P60604 165 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 RANP62826 216 aaKnown RBP1.97□□□□□ -2.09
MCF2-208ENST00000519895 RPL19P84098 196 aaKnown RBP1.97□□□□□ -2.09
MCF2-208ENST00000519895 ELOBQ15370 118 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 RHOHQ15669 191 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 ATRAIDQ6UW56 229 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 GOLT1AQ6ZVE7 132 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 PRNTQ86SH4 94 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 LINC01561Q8N1V8 128 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 FAM213BQ8TBF2 198 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 SFT2D1Q8WV19 159 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 KRTAP2-4Q9BYR9 128 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 SMIM3Q9BZL3 60 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 SLC35B3Q9H1N7 401 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 NAT8Q9UHE5 227 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 COX11Q9Y6N1 276 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 ICOSQ9Y6W8 199 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 IGHV3-35A0A0C4DH35 117 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 LINC01546A6NGU7 62 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 A8MWL6 223 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 DNAH10OSP0CZ25 163 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 RNASE3P12724 160 aaKnown RBP1.97□□□□□ -2.09
MCF2-208ENST00000519895 RPL35AP18077 110 aaKnown RBP1.97□□□□□ -2.09
MCF2-208ENST00000519895 CRYBA4P53673 196 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 FHL2Q14192 279 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 NDUFA5Q16718 116 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 DEFB135Q30KP9 77 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 ZNF575Q86XF7 245 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 EXOC3-AS1Q8N2X6 119 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 RNF182Q8N6D2 247 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 NEXN-AS1Q8NBZ9 246 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 MRAP2Q96G30 205 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 PRADC1Q9BSG0 188 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 FAT1Q14517 4588 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 IGKV3D-20A0A0C4DH25 116 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 IGHV3-66A0A0C4DH42 116 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 SH2D1AO60880 128 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 HLA-DMBP28068 263 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 SPINK13Q1W4C9 94 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 FAM222AQ5U5X8 452 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 DAZ4Q86SG3 579 aaKnown RBP1.97□□□□□ -2.09
MCF2-208ENST00000519895 BAGE2Q86Y30 109 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 NTN5Q8WTR8 489 aaPredicted RBP1.97□□□□□ -2.09
MCF2-208ENST00000519895 TIMM21Q9BVV7 248 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 DAZ3Q9NR90 486 aaKnown RBP1.97□□□□□ -2.09
MCF2-208ENST00000519895 CARHSP1Q9Y2V2 147 aaKnown RBP1.97□□□□□ -2.09
MCF2-208ENST00000519895 KIF25-AS1Q9Y6Z4 181 aa1.97□□□□□ -2.09
MCF2-208ENST00000519895 IGKV2-40A0A087WW87 121 aaPredicted RBP1.96□□□□□ -2.1
MCF2-208ENST00000519895 DEFB131BA0A096LNP1 70 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 SMIM27A0A1W2PRY6 76 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 M0R3E3 92 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 IGKV2D-40P01614 121 aaPredicted RBP1.96□□□□□ -2.1
MCF2-208ENST00000519895 PPBPP02775 128 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 G0S2P27469 103 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 RPL35P42766 123 aaKnown RBP1.96□□□□□ -2.1
MCF2-208ENST00000519895 GNG4P50150 75 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 CRIP1P50238 77 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 RAB14P61106 215 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 LINC01556Q5JQF7 62 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 Q5VSD8 79 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 PRR26Q8N8Z3 221 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 TSKUQ8WUA8 353 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 BLNKQ8WV28 456 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 ZC2HC1AQ96GY0 325 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 SEC11CQ9BY50 192 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 WFDC10AQ9H1F0 79 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 RPP21Q9H633 154 aaKnown RBP1.96□□□□□ -2.1
MCF2-208ENST00000519895 NAGKQ9UJ70 344 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 TRAV9-2A0A087WT02 112 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 IGHV3-49A0A0A0MS15 119 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 A0A1B0GUV1 79 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 RNASE4P34096 147 aaKnown RBP1.96□□□□□ -2.1
MCF2-208ENST00000519895 SEC61BP60468 96 aaKnown RBP1.96□□□□□ -2.1
MCF2-208ENST00000519895 TMEM241Q24JQ0 296 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 PRR9Q5T870 116 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 CFAP126Q5VTH2 177 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.96□□□□□ -2.1
MCF2-208ENST00000519895 ISOC2Q96AB3 205 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 TMEM191AQ9H0A3 160 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 XCL2Q9UBD3 114 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 TNFRSF18Q9Y5U5 241 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 TSPAN13O95857 204 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 AZU1P20160 251 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 CD300CQ08708 224 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 ERCC8Q13216 396 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 BTN1A1Q13410 526 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 FAM19A3Q7Z5A8 133 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 C15orf54Q8N8G6 183 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 RMI2Q96E14 147 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 AP1S3Q96PC3 154 aa1.96□□□□□ -2.1
MCF2-208ENST00000519895 C20orf78Q9BR46 151 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms