RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	ERG28	Q9UKR5	140 aa		5.3	□□□□□ -1.56
NR1I3-231	ENST00000512340	CSDC2	Q9Y534	153 aa	Known RBP	5.3	□□□□□ -1.56
NR1I3-231	ENST00000512340	HUWE1	Q7Z6Z7	4374 aa	Known RBP	5.3	□□□□□ -1.56
NR1I3-231	ENST00000512340	IGHV3-16	A0A0C4DH30	117 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	PAX4	O43316	350 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	GNRH2	O43555	120 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	SH2D1A	O60880	128 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	NUDT3	O95989	172 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	TRGC2	P03986	189 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	MGST1	P10620	155 aa	Known RBP	5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	HNRNPA3	P51991	378 aa	Known RBP	5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	HSD52	Q0P140	79 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	SMAGP	Q0VAQ4	97 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	GTF2H5	Q6ZYL4	71 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	SH2D6	Q7Z4S9	175 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	LINC00612	Q8N6U2	182 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	LYPD6B	Q8NI32	183 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	LINC00476	Q8WZB0	136 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	VAMP8	Q9BV40	100 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	MDFIC	Q9P1T7	246 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	PRO0255	Q9UI72	69 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	HSPB8	Q9UJY1	196 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	APLN	Q9ULZ1	77 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	PHLDA3	Q9Y5J5	127 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	MUC4	Q99102	2169 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	DNAH1	Q9P2D7	4330 aa		5.29	□□□□□ -1.56
NR1I3-231	ENST00000512340	TRBV24-1	A0A075B6N3	115 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	TRAV4	A0A0B4J268	109 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340		A8MWV9	139 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340		C9JCJ5	164 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	RHOD	O00212	210 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340		P01737	135 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	CXCL1	P09341	107 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	ZNF80	P51504	273 aa	Predicted RBP	5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	LINC01559	Q495D7	138 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	CENPW	Q5EE01	88 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	ZNF506	Q5JVG8	444 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	ZC2HC1A	Q96GY0	325 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	PRADC1	Q9BSG0	188 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	IL36B	Q9NZH7	164 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	ICOS	Q9Y6W8	199 aa		5.28	□□□□□ -1.56
NR1I3-231	ENST00000512340	TNFRSF6B	O95407	300 aa		5.27	□□□□□ -1.57
NR1I3-231	ENST00000512340	MED14OS	P0DP75	135 aa		5.27	□□□□□ -1.57
NR1I3-231	ENST00000512340	MRPL23	Q16540	153 aa	Known RBP	5.27	□□□□□ -1.57
NR1I3-231	ENST00000512340	POM121L12	Q8N7R1	296 aa		5.27	□□□□□ -1.57
NR1I3-231	ENST00000512340	MAP1LC3C	Q9BXW4	147 aa		5.27	□□□□□ -1.57
NR1I3-231	ENST00000512340	SPANXC	Q9NY87	97 aa		5.27	□□□□□ -1.57
NR1I3-231	ENST00000512340	HHLA3	Q9XRX5	114 aa		5.27	□□□□□ -1.57
NR1I3-231	ENST00000512340	TMSB15B	A0A087X1C1	80 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340		A0A0J9YY99	117 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	GAGE12H	A6NDE8	117 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340		F2Z2F3	143 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340		H3BVH4	76 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	IGHV3-53	P01767	116 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	SRI	P30626	198 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	AMT	P48728	403 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	SPANXN1	Q5VSR9	72 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	RNASEK	Q6P5S7	137 aa	Known RBP	5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	C9orf85	Q96MD7	179 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	MLST8	Q9BVC4	326 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	TMEM126A	Q9H061	195 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	GTSF1L	Q9H1H1	148 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	LY96	Q9Y6Y9	160 aa		5.26	□□□□□ -1.57
NR1I3-231	ENST00000512340	NACA	E9PAV3	2078 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	IGKV3D-20	A0A0C4DH25	116 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	GRIFIN	A4D1Z8	144 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	ZNF727	A8MUV8	499 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	ARMS2	P0C7Q2	107 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	SEC61G	P60059	68 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	CACNG7	P62955	275 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	RPL24	P83731	157 aa	Known RBP	5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	RHOH	Q15669	191 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	SOHLH1	Q5JUK2	328 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	ZFP2	Q6ZN57	461 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340		Q6ZQT7	251 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	OR5A1	Q8NGJ0	315 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	BORCS7	Q96B45	105 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	SMIM7	Q9BQ49	75 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	DERL1	Q9BUN8	251 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	PARL	Q9H300	379 aa		5.25	□□□□□ -1.57
NR1I3-231	ENST00000512340	CSMD3	Q7Z407	3707 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340		A0A087WX48	190 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	TRBV6-4	A0A1B0GX49	114 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340		M0R381	172 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	RS1	O15537	224 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	OR5AL1	P0C617	328 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	RNASE3	P12724	160 aa	Known RBP	5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	CTRL	P40313	264 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	CRIP1	P50238	77 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	TTC32	Q5I0X7	151 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	UFSP1	Q6NVU6	142 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340		Q6ZN92	141 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	BTF3L4	Q96K17	158 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	KRTAP3-3	Q9BYR6	98 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	KRTAP3-2	Q9BYR7	98 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	C11orf21	Q9P2W6	132 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	NAT8B	Q9UHF3	227 aa		5.24	□□□□□ -1.57
NR1I3-231	ENST00000512340	TRAV9-2	A0A087WT02	112 aa		5.23	□□□□□ -1.57
NR1I3-231	ENST00000512340		A8MWL6	223 aa		5.23	□□□□□ -1.57
NR1I3-231	ENST00000512340		C9JQL5	133 aa		5.23	□□□□□ -1.57

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms