RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 KCNRGQ8N5I3 272 aa0.1□□□□□ -2.39
HMGB1P28-201ENST00000507778 PFDN5Q99471 154 aa0.1□□□□□ -2.39
HMGB1P28-201ENST00000507778 KIF13AQ9H1H9 1805 aa0.1□□□□□ -2.39
HMGB1P28-201ENST00000507778 KIAA0100Q14667 2235 aaKnown RBP0.09□□□□□ -2.39
HMGB1P28-201ENST00000507778 F8P00451 2351 aa0.09□□□□□ -2.39
HMGB1P28-201ENST00000507778 CLPSL1A2RUU4 121 aa0.09□□□□□ -2.4
HMGB1P28-201ENST00000507778 APOC4-APOC2K7ER74 178 aa0.09□□□□□ -2.4
HMGB1P28-201ENST00000507778 SPTSSBQ8NFR3 76 aa0.09□□□□□ -2.4
HMGB1P28-201ENST00000507778 TMEM191AQ9H0A3 160 aa0.09□□□□□ -2.4
HMGB1P28-201ENST00000507778 PLXNA1Q9UIW2 1896 aa0.08□□□□□ -2.4
HMGB1P28-201ENST00000507778 CADP27708 2225 aa0.08□□□□□ -2.4
HMGB1P28-201ENST00000507778 S100A7L2Q5SY68 101 aa0.08□□□□□ -2.4
HMGB1P28-201ENST00000507778 ZNF818PQ6ZRF7 136 aa0.08□□□□□ -2.4
HMGB1P28-201ENST00000507778 POLQO75417 2590 aa0.08□□□□□ -2.4
HMGB1P28-201ENST00000507778 NCOR2Q9Y618 2525 aa0.08□□□□□ -2.4
HMGB1P28-201ENST00000507778 ASXL3Q9C0F0 2248 aa0.07□□□□□ -2.4
HMGB1P28-201ENST00000507778 TRAV1-2A0A0B4J238 106 aa0.07□□□□□ -2.4
HMGB1P28-201ENST00000507778 SDF2Q99470 211 aa0.07□□□□□ -2.4
HMGB1P28-201ENST00000507778 WFDC6Q9BQY6 131 aa0.07□□□□□ -2.4
HMGB1P28-201ENST00000507778 GOLGA3Q08378 1498 aa0.07□□□□□ -2.4
HMGB1P28-201ENST00000507778 NRXN2Q9P2S2 1712 aa0.07□□□□□ -2.4
HMGB1P28-201ENST00000507778 MYOM3Q5VTT5 1437 aa0.06□□□□□ -2.4
HMGB1P28-201ENST00000507778 UBE2DNLQ8IWF7 75 aa0.06□□□□□ -2.4
HMGB1P28-201ENST00000507778 CCDC167Q9P0B6 97 aa0.06□□□□□ -2.4
HMGB1P28-201ENST00000507778 MYH13Q9UKX3 1938 aa0.06□□□□□ -2.4
HMGB1P28-201ENST00000507778 TRBV10-3A0A0K0K1G6 114 aa0.05□□□□□ -2.4
HMGB1P28-201ENST00000507778 FAM92AA1XBS5 289 aa0.05□□□□□ -2.4
HMGB1P28-201ENST00000507778 PAIP2BQ9ULR5 123 aaKnown RBP0.05□□□□□ -2.4
HMGB1P28-201ENST00000507778 CDK5RAP2Q96SN8 1893 aa0.05□□□□□ -2.4
HMGB1P28-201ENST00000507778 LAMB1P07942 1786 aa0.04□□□□□ -2.4
HMGB1P28-201ENST00000507778 SMIM6P0DI80 62 aa0.04□□□□□ -2.4
HMGB1P28-201ENST00000507778 CCL8P80075 99 aa0.04□□□□□ -2.4
HMGB1P28-201ENST00000507778 SEC11CQ9BY50 192 aa0.04□□□□□ -2.4
HMGB1P28-201ENST00000507778 DMBT1Q9UGM3 2413 aaPredicted RBP0.04□□□□□ -2.4
HMGB1P28-201ENST00000507778 MUC22E2RYF6 1773 aaPredicted RBP0.04□□□□□ -2.4
HMGB1P28-201ENST00000507778 ANK2Q01484 3957 aa0.04□□□□□ -2.4
HMGB1P28-201ENST00000507778 ZNF518AQ6AHZ1 1483 aa0.03□□□□□ -2.4
HMGB1P28-201ENST00000507778 IGSF10Q6WRI0 2623 aa0.03□□□□□ -2.4
HMGB1P28-201ENST00000507778 G3V318 75 aa0.03□□□□□ -2.4
HMGB1P28-201ENST00000507778 SSBP3-AS1Q7Z2R9 100 aa0.03□□□□□ -2.4
HMGB1P28-201ENST00000507778 DPH3Q96FX2 82 aa0.03□□□□□ -2.4
HMGB1P28-201ENST00000507778 SPRR2GQ9BYE4 73 aa0.03□□□□□ -2.4
HMGB1P28-201ENST00000507778 LINC00312Q9Y6C7 94 aa0.03□□□□□ -2.4
HMGB1P28-201ENST00000507778 U3KQA8 63 aa0.03□□□□□ -2.4
HMGB1P28-201ENST00000507778 CASKIN1Q8WXD9 1431 aa0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 IFT140Q96RY7 1462 aa0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 PHIPQ8WWQ0 1821 aa0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 ZNF815PA8K554 130 aa0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 ARPC4P59998 168 aa0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 Q5VV11 94 aa0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 BAGE3Q86Y29 109 aa0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 GRIN2AQ12879 1464 aa0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 ZMYM4Q5VZL5 1548 aa0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 AKAP11Q9UKA4 1901 aa0.01□□□□□ -2.41
HMGB1P28-201ENST00000507778 AHCTF1Q8WYP5 2266 aa0.01□□□□□ -2.41
HMGB1P28-201ENST00000507778 PIN1P1O15428 100 aa0.01□□□□□ -2.41
HMGB1P28-201ENST00000507778 PDCD10Q9BUL8 212 aa0.01□□□□□ -2.41
HMGB1P28-201ENST00000507778 LRRC37A3O60309 1634 aa0.01□□□□□ -2.41
HMGB1P28-201ENST00000507778 DOCK11Q5JSL3 2073 aa0.01□□□□□ -2.41
HMGB1P28-201ENST00000507778 MUC12Q9UKN1 5478 aa0□□□□□ -2.41
HMGB1P28-201ENST00000507778 HRNRQ86YZ3 2850 aaPredicted RBP0□□□□□ -2.41
HMGB1P28-201ENST00000507778 COPS9Q8WXC6 57 aa0□□□□□ -2.41
HMGB1P28-201ENST00000507778 ARFGEF1Q9Y6D6 1849 aa-0.01□□□□□ -2.41
HMGB1P28-201ENST00000507778 HIST1H1DP16402 221 aaKnown RBP-0.01□□□□□ -2.41
HMGB1P28-201ENST00000507778 CACNA1CQ13936 2221 aa-0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 MYH6P13533 1939 aa-0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 PIGBOS1A0A0B4J2F0 54 aa-0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 SIX6O95475 246 aa-0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 SPINK8P0C7L1 97 aa-0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 IFITM1P13164 125 aa-0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 CFAP126Q5VTH2 177 aa-0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 COL7A1Q02388 2944 aa-0.02□□□□□ -2.41
HMGB1P28-201ENST00000507778 MYH9P35579 1960 aaKnown RBP-0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 PXDNQ92626 1479 aa-0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 OTOGQ6ZRI0 2925 aa-0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 HIVEP3Q5T1R4 2406 aa-0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 PARP14Q460N5 1801 aa-0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 A0A0D9SFI3 127 aa-0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 CCL18P55774 89 aa-0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 CNFNQ9BYD5 112 aa-0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 CYP4F30PQ9H0H9 118 aa-0.03□□□□□ -2.41
HMGB1P28-201ENST00000507778 SIPA1L3O60292 1781 aaPredicted RBP-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 MYH8P13535 1937 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 TRAV13-2A0A0B4J235 113 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 SPAARA0A1B0GVQ0 90 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 HCG22E2RYF7 251 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 PPP1R17O96001 155 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 CCDC58Q4VC31 144 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 ARL11Q969Q4 196 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 AQP10Q96PS8 301 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 AGPAT4-IT1Q9H0P7 198 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 PRO0255Q9UI72 69 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 R4GMQ9 66 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 BICRAQ9NZM4 1560 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 ZNF609O15014 1411 aa-0.04□□□□□ -2.42
HMGB1P28-201ENST00000507778 SPEF2Q9C093 1822 aa-0.05□□□□□ -2.42
HMGB1P28-201ENST00000507778 SELENOWP63302 87 aa-0.05□□□□□ -2.42
HMGB1P28-201ENST00000507778 RBM3P98179 157 aaKnown RBP-0.05□□□□□ -2.42
HMGB1P28-201ENST00000507778 C12orf73Q69YU5 71 aa-0.05□□□□□ -2.42
HMGB1P28-201ENST00000507778 NPVFQ9HCQ7 196 aa-0.05□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms