RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 TIRAPP58753 221 aa12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 LOXL1Q08397 574 aaPredicted RBP12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 ESM1Q9NQ30 184 aa12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 INSL3P51460 131 aa12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 Q6ZPA2 131 aa12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 CITED2Q99967 270 aaPredicted RBP12.59□□□□□ -0.39
PCDHA1-203ENST00000504120 IGHV1-58A0A0C4DH39 117 aa12.58□□□□□ -0.4
PCDHA1-203ENST00000504120 RS1O15537 224 aa12.58□□□□□ -0.4
PCDHA1-203ENST00000504120 DAND5Q8N907 189 aa12.58□□□□□ -0.4
PCDHA1-203ENST00000504120 A0A0B4J2C4 111 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 IGLV2-8P01709 118 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 SPATA12Q7Z6I5 190 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 TAX1BP3O14907 124 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 DEFB135Q30KP9 77 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 CRIP3Q6Q6R5 217 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 ODF3Q96PU9 254 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 MAP6D1Q9H9H5 199 aa12.57□□□□□ -0.4
PCDHA1-203ENST00000504120 ZNF80P51504 273 aaPredicted RBP12.56□□□□□ -0.4
PCDHA1-203ENST00000504120 IGF1P05019 195 aa12.56□□□□□ -0.4
PCDHA1-203ENST00000504120 PRO0255Q9UI72 69 aa12.55□□□□□ -0.4
PCDHA1-203ENST00000504120 F8W735 103 aaPredicted RBP12.55□□□□□ -0.4
PCDHA1-203ENST00000504120 EIF4EBP1Q13541 118 aaPredicted RBP12.55□□□□□ -0.4
PCDHA1-203ENST00000504120 SPAG11BQ08648 103 aa12.55□□□□□ -0.4
PCDHA1-203ENST00000504120 ZNF295-AS1Q8N0V1 137 aa12.55□□□□□ -0.4
PCDHA1-203ENST00000504120 DYSFO75923 2080 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 PCDH15Q96QU1 1955 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 LGALS9O00182 355 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 NDUFS5O43920 106 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 JMJD7-PLA2G4BH0Y9G9 81 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 DNAJC9-AS1A6NH13 148 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 WFDC2Q14508 124 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 LINC00322Q6ZN03 302 aaPredicted RBP12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 LRRC75A-AS1Q8N1F1 130 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 MLST8Q9BVC4 326 aa12.54□□□□□ -0.4
PCDHA1-203ENST00000504120 TRBV10-2A0A0K0K1G8 114 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 IGLC6P0CF74 106 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 TM2D2Q9BX73 214 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 TNRC6AQ8NDV7 1962 aaKnown RBP12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 LINC01548A6NM66 108 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 H3BT86 120 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 BDP1A6H8Y1 2624 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 SMAD5-AS1Q9Y6J3 95 aa12.53□□□□□ -0.4
PCDHA1-203ENST00000504120 NCR3O14931 201 aa12.52□□□□□ -0.4
PCDHA1-203ENST00000504120 MIR7-3HGQ8N6C7 128 aa12.52□□□□□ -0.4
PCDHA1-203ENST00000504120 C1orf229Q6ZS94 237 aaPredicted RBP12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 PTPRQQ9UMZ3 2332 aa12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 LECT2O14960 151 aa12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 TMEM258P61165 79 aa12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 RBM3P98179 157 aaKnown RBP12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 KLK12Q9UKR0 248 aa12.52□□□□□ -0.41
PCDHA1-203ENST00000504120 CRYGBP07316 175 aa12.51□□□□□ -0.41
PCDHA1-203ENST00000504120 PRORYQ9H606 182 aa12.51□□□□□ -0.41
PCDHA1-203ENST00000504120 DEFB4AO15263 64 aa12.51□□□□□ -0.41
PCDHA1-203ENST00000504120 FOXI1Q12951 378 aa12.5□□□□□ -0.41
PCDHA1-203ENST00000504120 NREPQ16612 68 aa12.5□□□□□ -0.41
PCDHA1-203ENST00000504120 EBI3Q14213 229 aa12.5□□□□□ -0.41
PCDHA1-203ENST00000504120 DIRC1Q969H9 104 aa12.5□□□□□ -0.41
PCDHA1-203ENST00000504120 ATOX1O00244 68 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 Q6YL49 198 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 Q6ZUT4 128 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 CHD3Q12873 2000 aaKnown RBP12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 K7EQG2 157 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 PTPRSQ13332 1948 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 GDF5OSQ5U4N7 250 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 C22orf34Q6ZV56 151 aa12.49□□□□□ -0.41
PCDHA1-203ENST00000504120 NDUFB1O75438 58 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 CLEC2BQ92478 149 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 B5MCH6 92 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 C19orf84I3L1E1 186 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 MIAQ16674 131 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 NDUFA11Q86Y39 141 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 NCOA6Q14686 2063 aaPredicted RBP12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 LY6LH3BQJ8 138 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 NFE4Q86UQ8 179 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 MBD6Q96DN6 1003 aa12.48□□□□□ -0.41
PCDHA1-203ENST00000504120 IGHV4-28A0A0C4DH34 117 aa12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 IGKV3D-7A0A0C4DH55 119 aa12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 TP53TG3Q9ULZ0 132 aa12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 ANKHD1Q8IWZ3 2542 aaKnown RBP12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 CEMP1Q6PRD7 247 aaPredicted RBP12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 FREM1Q5H8C1 2179 aa12.47□□□□□ -0.41
PCDHA1-203ENST00000504120 TMEM256-PLSCR3K7ERE1 68 aa12.46□□□□□ -0.41
PCDHA1-203ENST00000504120 PSMB8P28062 276 aa12.46□□□□□ -0.42
PCDHA1-203ENST00000504120 IGHV4-31P0DP07 118 aa12.46□□□□□ -0.42
PCDHA1-203ENST00000504120 UBE2AP49459 152 aa12.46□□□□□ -0.42
PCDHA1-203ENST00000504120 A0A1B0GX51 115 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 ACACBO00763 2458 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 Q6ZTI0 123 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 OTOGLQ3ZCN5 2332 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 NUP210LQ5VU65 1888 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 PLA2G5P39877 138 aa12.45□□□□□ -0.42
PCDHA1-203ENST00000504120 RNASE8Q8TDE3 154 aaKnown RBP12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 DEFB114Q30KQ6 69 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 ZFAND3Q9H8U3 227 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 NACAE9PAV3 2078 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 FAM236AA0A1B0GUQ0 79 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 FAM236BA0A1B0GV22 79 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 P0DMU3 169 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 FAM231AP0DMU4 169 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 FAM231CP0DMU5 169 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms