RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ATP5G1P05496 136 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 FRMD6-AS1P0C7T7 363 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 DEFB121Q5J5C9 76 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 LGALS9CQ6DKI2 356 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 Q6ZWC4 215 aa6.13□□□□□ -1.43
USP54-215ENST00000497106 TRBV25-1A0A075B6N4 114 aa6.12□□□□□ -1.43
USP54-215ENST00000497106 IGKCP01834 107 aa6.12□□□□□ -1.43
USP54-215ENST00000497106 RASL10AQ92737 203 aa6.12□□□□□ -1.43
USP54-215ENST00000497106 ERASQ7Z444 233 aa6.12□□□□□ -1.43
USP54-215ENST00000497106 GEMIN7Q9H840 131 aaKnown RBP6.12□□□□□ -1.43
USP54-215ENST00000497106 SPANXA1Q9NS26 97 aa6.12□□□□□ -1.43
USP54-215ENST00000497106 CFAP46Q8IYW2 2715 aa6.12□□□□□ -1.43
USP54-215ENST00000497106 HELZ2Q9BYK8 2649 aaKnown RBP6.12□□□□□ -1.43
USP54-215ENST00000497106 CRXO43186 299 aaPredicted RBP6.11□□□□□ -1.43
USP54-215ENST00000497106 DEFB135Q30KP9 77 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 ZNRF2Q8NHG8 242 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 KMT2BQ9UMN6 2715 aaPredicted RBP6.11□□□□□ -1.43
USP54-215ENST00000497106 SLC25A34Q6PIV7 304 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 TP53TG1Q9Y2A0 90 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 RBMY1BA6NDE4 496 aaKnown RBP6.11□□□□□ -1.43
USP54-215ENST00000497106 RBMY1EA6NEQ0 496 aaKnown RBP6.11□□□□□ -1.43
USP54-215ENST00000497106 RBMY1DP0C7P1 496 aaKnown RBP6.11□□□□□ -1.43
USP54-215ENST00000497106 OR5A1Q8NGJ0 315 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 TMEM243Q9BU79 118 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 GAGE12JA6NER3 117 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 J3QR89 54 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 GAGE4Q13068 117 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 GAGE5Q13069 117 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 GAGE13Q4V321 117 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 CFAP126Q5VTH2 177 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 C1orf158Q8N1D5 194 aa6.11□□□□□ -1.43
USP54-215ENST00000497106 TRBV7-3A0A075B6L6 115 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 HTN3P15516 51 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 KRTAP10-3P60369 221 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 BOD1L2Q8IYS8 172 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 RPL39LQ96EH5 51 aaKnown RBP6.1□□□□□ -1.43
USP54-215ENST00000497106 SPATA25Q9BR10 227 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 TRBV6-4A0A1B0GX49 114 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 PAX4O43316 350 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 PMVKQ15126 192 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 TOMM6Q96B49 74 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 TIMM17AQ99595 171 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 CHCHD5Q9BSY4 110 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 EDA2RQ9HAV5 297 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 IGLC3P0DOY3 106 aa6.1□□□□□ -1.43
USP54-215ENST00000497106 GATA1P15976 413 aaPredicted RBP6.1□□□□□ -1.43
USP54-215ENST00000497106 F5H768 121 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 M0QY20 66 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 CRYGDP07320 174 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 OVOL2Q9BRP0 275 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 TRAV12-1A0A0B4J245 112 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 GAGE10A6NGK3 116 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 IGHV4-30-4P0DP06 118 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 NRACQ8N912 160 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 WFDC10AQ9H1F0 79 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 PRO0255Q9UI72 69 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 TMEM262E9PQX1 116 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 H7C423 109 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 TSPAN13O95857 204 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 LGALS3P17931 250 aaKnown RBP6.09□□□□□ -1.43
USP54-215ENST00000497106 MRPL23Q16540 153 aaKnown RBP6.09□□□□□ -1.43
USP54-215ENST00000497106 COPS9Q8WXC6 57 aa6.09□□□□□ -1.43
USP54-215ENST00000497106 TLN2Q9Y4G6 2542 aa6.09□□□□□ -1.44
USP54-215ENST00000497106 A4D1N5 150 aa6.09□□□□□ -1.44
USP54-215ENST00000497106 Q6ZTI0 123 aa6.09□□□□□ -1.44
USP54-215ENST00000497106 SPATA12Q7Z6I5 190 aa6.09□□□□□ -1.44
USP54-215ENST00000497106 GTSF1LQ9H1H1 148 aa6.09□□□□□ -1.44
USP54-215ENST00000497106 SS18L2Q9UHA2 77 aa6.09□□□□□ -1.44
USP54-215ENST00000497106 MYO9AB2RTY4 2548 aa6.08□□□□□ -1.44
USP54-215ENST00000497106 Q6ZVH6 145 aa6.08□□□□□ -1.44
USP54-215ENST00000497106 POM121L12Q8N7R1 296 aa6.08□□□□□ -1.44
USP54-215ENST00000497106 ICOSQ9Y6W8 199 aa6.08□□□□□ -1.44
USP54-215ENST00000497106 TRAV8-6A0A0B4J262 113 aa6.08□□□□□ -1.44
USP54-215ENST00000497106 TRBV27A0A0K0K1C4 114 aa6.08□□□□□ -1.44
USP54-215ENST00000497106 NMUP48645 174 aa6.08□□□□□ -1.44
USP54-215ENST00000497106 PHLDA1Q8WV24 401 aaPredicted RBP6.08□□□□□ -1.44
USP54-215ENST00000497106 CHD6Q8TD26 2715 aa6.08□□□□□ -1.44
USP54-215ENST00000497106 JPT2Q9H910 190 aa6.08□□□□□ -1.44
USP54-215ENST00000497106 HHLA3Q9XRX5 114 aa6.08□□□□□ -1.44
USP54-215ENST00000497106 A0A087WX48 190 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 TMEM170BQ5T4T1 132 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 RNF183Q96D59 192 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 HECTD1Q9ULT8 2610 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 PLEKHB2Q96CS7 222 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 WDFY3Q8IZQ1 3526 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 ATMQ13315 3056 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 F8VRH5 84 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 NUPR1O60356 82 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 SCGB1D4Q6XE38 83 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 C11orf72Q8NBR9 251 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 UNC79Q9P2D8 2635 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 WIPF1O43516 503 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 LINC01545Q5VT33 79 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 ATP6V0E2Q8NHE4 81 aa6.07□□□□□ -1.44
USP54-215ENST00000497106 Q6ZQT7 251 aa6.06□□□□□ -1.44
USP54-215ENST00000497106 LOC400499M0QZD8 3231 aa6.06□□□□□ -1.44
USP54-215ENST00000497106 IGHV4-28A0A0C4DH34 117 aa6.06□□□□□ -1.44
USP54-215ENST00000497106 OXLD1Q5BKU9 147 aa6.06□□□□□ -1.44
USP54-215ENST00000497106 FAM222AQ5U5X8 452 aa6.06□□□□□ -1.44
USP54-215ENST00000497106 ATOH7Q8N100 152 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms