RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 A0A0G2JRQ6 117 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 PRB1P04280 392 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 SYCNQ0VAF6 134 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 ZFAND3Q9H8U3 227 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.51□□□□□ -1.69
USF3-204ENST00000496826 ATP1A1-AS1Q5TC04 95 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 GPR179Q6PRD1 2367 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 FAM208BQ5VWN6 2430 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 SHPRHQ149N8 1683 aa4.51□□□□□ -1.69
USF3-204ENST00000496826 TRAV22A0A0B4J277 110 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 IGKV2-24A0A0C4DH68 120 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 CISD3P0C7P0 127 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 COL8A2P25067 703 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 VOPP1Q96AW1 172 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 ARFGEF2Q9Y6D5 1785 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 PRLHP81277 87 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 EPOPA6NHQ4 379 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 ENHOQ6UWT2 76 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 C6orf223Q8N319 242 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 ODF3Q96PU9 254 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 B3GALT5-AS1P59052 145 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 MIR7-3HGQ8N6C7 128 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 BCORQ6W2J9 1755 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 IGKV1-17P01599 117 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 H3BRN7 92 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 PLA2G10O15496 165 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 Q8TAT8 98 aa4.5□□□□□ -1.69
USF3-204ENST00000496826 ARAP2Q8WZ64 1704 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 A0A0J9YXV3 536 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 BRCA1P38398 1863 aaKnown RBP4.49□□□□□ -1.69
USF3-204ENST00000496826 NOTCH4Q99466 2003 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 DLEC1Q9Y238 1755 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 ARHGEF28Q8N1W1 1705 aaKnown RBP4.49□□□□□ -1.69
USF3-204ENST00000496826 HCG22E2RYF7 251 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 IGLC6P0CF74 106 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 CHCHD7Q9BUK0 85 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 SPG11Q96JI7 2443 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 HCRTO43612 131 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 Q8N814 137 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 TGFBR3LH3BV60 316 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 IGLC1P0CG04 106 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 IGHV1-2P23083 117 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 LY6DQ14210 128 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 PCNX3Q9H6A9 2034 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 IGHV3-38A0A0C4DH36 116 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 IGHV1-46P01743 117 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 RTBDNQ9BSG5 229 aaPredicted RBP4.49□□□□□ -1.69
USF3-204ENST00000496826 WNK3Q9BYP7 1800 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 TET2Q6N021 2002 aaPredicted RBP4.49□□□□□ -1.69
USF3-204ENST00000496826 LINC00173Q6ZV60 143 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 NPBQ8NG41 125 aa4.49□□□□□ -1.69
USF3-204ENST00000496826 Q6ZTC4 211 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 SBF2Q86WG5 1849 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 REG3AQ06141 175 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 LINC00575Q6W349 94 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 CRIPAKQ8N1N5 446 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 LINC00208Q96KT6 92 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 TAF1LQ8IZX4 1826 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 ATP11AUNQ6ZP68 121 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 FOXL2NBQ6ZUU3 175 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 IGLV10-54A0A075B6I4 117 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 WT1P19544 449 aaPredicted RBP4.48□□□□□ -1.69
USF3-204ENST00000496826 NRAPQ86VF7 1730 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 IGKV1D-43A0A0B4J1Z2 117 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 IGKV1-12A0A0C4DH73 117 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 QSER1Q2KHR3 1735 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 PATE2Q6UY27 113 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 STRCP1A6NGW2 1772 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 STRCQ7RTU9 1775 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 TRBV6-5A0A0K0K1A5 114 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 H0Y9P7 68 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 IGHV4-30-4P0DP06 118 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 IGHV4-31P0DP07 118 aa4.48□□□□□ -1.69
USF3-204ENST00000496826 ELOF1P60002 83 aaKnown RBP4.48□□□□□ -1.69
USF3-204ENST00000496826 WFDC13Q8IUB5 93 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 ROBO1Q9Y6N7 1651 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 AGPAT4-IT1Q9H0P7 198 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 CCDC168Q8NDH2 2452 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 PAPPA2Q9BXP8 1791 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 DSCAMO60469 2012 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 LINC01590Q5TEZ4 76 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 RITA1Q96K30 269 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 BCE1O60756 84 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 A0A096LPF7 62 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 SMKR1H3BMG3 65 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 FAM229AH3BQW9 127 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 CT62P0C5K7 136 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 Q8N2B8 174 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 ZFAND2AQ8N6M9 145 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 MYLKQ15746 1914 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 ATP6V0E1O15342 81 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 C6orf99Q4VX62 202 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 PRSS57Q6UWY2 283 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 SPACA3Q8IXA5 215 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 DEFB131BA0A096LNP1 70 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 SSBP3-AS1Q7Z2R9 100 aa4.47□□□□□ -1.69
USF3-204ENST00000496826 PATJQ8NI35 1801 aa4.46□□□□□ -1.69
USF3-204ENST00000496826 PIK3C2AO00443 1686 aa4.46□□□□□ -1.69
USF3-204ENST00000496826 Q8TCH9 128 aa4.46□□□□□ -1.69
USF3-204ENST00000496826 CYP4F30PQ9H0H9 118 aa4.46□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms