RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TIMM21Q9BVV7 248 aa7.18□□□□□ -1.26
SYNE1-230ENST00000495090 POLEQ07864 2286 aa7.18□□□□□ -1.26
SYNE1-230ENST00000495090 IGHV1-58A0A0C4DH39 117 aa7.17□□□□□ -1.26
SYNE1-230ENST00000495090 A0A0J9YXV3 536 aa7.17□□□□□ -1.26
SYNE1-230ENST00000495090 NPFFO15130 113 aa7.17□□□□□ -1.26
SYNE1-230ENST00000495090 OPRPNQ99935 248 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-230ENST00000495090 YAE1D1Q9NRH1 226 aa7.17□□□□□ -1.26
SYNE1-230ENST00000495090 TRBV12-3P01733 135 aa7.17□□□□□ -1.26
SYNE1-230ENST00000495090 GRNP28799 593 aaKnown RBP7.17□□□□□ -1.26
SYNE1-230ENST00000495090 LY6DQ14210 128 aa7.17□□□□□ -1.26
SYNE1-230ENST00000495090 ZNF56Q15929 161 aa7.17□□□□□ -1.26
SYNE1-230ENST00000495090 SMIM20Q8N5G0 67 aa7.17□□□□□ -1.26
SYNE1-230ENST00000495090 RHPN1-AS1Q9BWJ2 59 aa7.17□□□□□ -1.26
SYNE1-230ENST00000495090 BEX4Q9NWD9 120 aaPredicted RBP7.17□□□□□ -1.26
SYNE1-230ENST00000495090 APC2O95996 2303 aa7.16□□□□□ -1.26
SYNE1-230ENST00000495090 PCNX1Q96RV3 2341 aa7.16□□□□□ -1.26
SYNE1-230ENST00000495090 RPL11P62913 178 aaKnown RBP7.16□□□□□ -1.26
SYNE1-230ENST00000495090 HERV-K104P63124 156 aa7.16□□□□□ -1.26
SYNE1-230ENST00000495090 MEIG1Q5JSS6 88 aa7.16□□□□□ -1.26
SYNE1-230ENST00000495090 FAM74A4Q5TZK3 123 aa7.16□□□□□ -1.26
SYNE1-230ENST00000495090 TMEM61Q8N0U2 210 aa7.16□□□□□ -1.26
SYNE1-230ENST00000495090 TMEM101Q96IK0 257 aa7.16□□□□□ -1.26
SYNE1-230ENST00000495090 DAZ1Q9NQZ3 744 aaKnown RBP7.16□□□□□ -1.26
SYNE1-230ENST00000495090 IGHV3-64A0A075B6Q5 118 aa7.15□□□□□ -1.26
SYNE1-230ENST00000495090 K7EMT4 169 aa7.15□□□□□ -1.26
SYNE1-230ENST00000495090 NDUFA12Q9UI09 145 aa7.15□□□□□ -1.26
SYNE1-230ENST00000495090 TRGV11A0A075B6L2 103 aa7.15□□□□□ -1.27
SYNE1-230ENST00000495090 TRAV12-3A0A0B4J271 114 aa7.15□□□□□ -1.27
SYNE1-230ENST00000495090 TINCRA0A1B0GVN0 87 aa7.15□□□□□ -1.27
SYNE1-230ENST00000495090 DCANP1Q8TF63 244 aa7.15□□□□□ -1.27
SYNE1-230ENST00000495090 DEFB104AQ8WTQ1 72 aa7.15□□□□□ -1.27
SYNE1-230ENST00000495090 VSIG2Q96IQ7 327 aa7.15□□□□□ -1.27
SYNE1-230ENST00000495090 CEP250Q9BV73 2442 aa7.15□□□□□ -1.27
SYNE1-230ENST00000495090 CNOT1A5YKK6 2376 aaKnown RBP7.14□□□□□ -1.27
SYNE1-230ENST00000495090 ABCA4P78363 2273 aa7.14□□□□□ -1.27
SYNE1-230ENST00000495090 TRAV25A0A0B4J276 109 aa7.14□□□□□ -1.27
SYNE1-230ENST00000495090 PRSS2P07478 247 aa7.14□□□□□ -1.27
SYNE1-230ENST00000495090 CD28P10747 220 aa7.14□□□□□ -1.27
SYNE1-230ENST00000495090 ADAMTSL4-AS1Q5T5F5 129 aa7.14□□□□□ -1.27
SYNE1-230ENST00000495090 RNF152Q8N8N0 203 aa7.14□□□□□ -1.27
SYNE1-230ENST00000495090 FAM104AQ969W3 186 aa7.14□□□□□ -1.27
SYNE1-230ENST00000495090 ZNF580Q9UK33 172 aa7.14□□□□□ -1.27
SYNE1-230ENST00000495090 ATP5G1P05496 136 aa7.13□□□□□ -1.27
SYNE1-230ENST00000495090 LINC01587Q99440 93 aa7.13□□□□□ -1.27
SYNE1-230ENST00000495090 PIEZO2Q9H5I5 2752 aa7.13□□□□□ -1.27
SYNE1-230ENST00000495090 OTOGLQ3ZCN5 2332 aa7.13□□□□□ -1.27
SYNE1-230ENST00000495090 TACC2O95359 2948 aa7.13□□□□□ -1.27
SYNE1-230ENST00000495090 IGHV1OR15-1A0A075B7D0 117 aa7.13□□□□□ -1.27
SYNE1-230ENST00000495090 WIPF1O43516 503 aa7.13□□□□□ -1.27
SYNE1-230ENST00000495090 IGHG2P01859 326 aa7.13□□□□□ -1.27
SYNE1-230ENST00000495090 TMEM219Q86XT9 240 aa7.13□□□□□ -1.27
SYNE1-230ENST00000495090 LMO4P61968 165 aa7.12□□□□□ -1.27
SYNE1-230ENST00000495090 CLEC2BQ92478 149 aa7.12□□□□□ -1.27
SYNE1-230ENST00000495090 DUX3Q96PT4 197 aa7.12□□□□□ -1.27
SYNE1-230ENST00000495090 LINC00527Q9UJ94 153 aa7.12□□□□□ -1.27
SYNE1-230ENST00000495090 BSNQ9UPA5 3926 aa7.12□□□□□ -1.27
SYNE1-230ENST00000495090 ANKHD1Q8IWZ3 2542 aaKnown RBP7.12□□□□□ -1.27
SYNE1-230ENST00000495090 TRAV8-3A0A0A6YYJ7 113 aa7.11□□□□□ -1.27
SYNE1-230ENST00000495090 ADARB2-AS1A8MUL3 147 aa7.11□□□□□ -1.27
SYNE1-230ENST00000495090 SDIM1Q6ZPB5 146 aa7.11□□□□□ -1.27
SYNE1-230ENST00000495090 MAP1BP46821 2468 aaKnown RBP7.11□□□□□ -1.27
SYNE1-230ENST00000495090 IGKV3-7A0A075B6H7 116 aa7.11□□□□□ -1.27
SYNE1-230ENST00000495090 LINC00643Q86TS7 51 aa7.11□□□□□ -1.27
SYNE1-230ENST00000495090 CHCHD5Q9BSY4 110 aa7.11□□□□□ -1.27
SYNE1-230ENST00000495090 CCL21O00585 134 aa7.1□□□□□ -1.27
SYNE1-230ENST00000495090 NDUFA1O15239 70 aa7.1□□□□□ -1.27
SYNE1-230ENST00000495090 IGLV1-40P01703 118 aa7.1□□□□□ -1.27
SYNE1-230ENST00000495090 PIK3CD-AS1Q5SR53 167 aa7.1□□□□□ -1.27
SYNE1-230ENST00000495090 COPS9Q8WXC6 57 aa7.1□□□□□ -1.27
SYNE1-230ENST00000495090 IGLV5-45A0A087WSX0 123 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 COX7A2LO14548 114 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 IGHV3-11P01762 117 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 SNRPD3P62318 126 aaKnown RBP7.09□□□□□ -1.27
SYNE1-230ENST00000495090 MGAQ8IWI9 3026 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 PPDPFQ9H3Y8 114 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 FAM236AA0A1B0GUQ0 79 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 FAM236BA0A1B0GV22 79 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 F8WDY8 70 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 CXCL5P42830 114 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 TIRAPP58753 221 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 CIRBPQ14011 172 aaKnown RBP7.09□□□□□ -1.27
SYNE1-230ENST00000495090 C5orf47Q569G3 176 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 PRORYQ9H606 182 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 UBE2D4Q9Y2X8 147 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 CSMD1Q96PZ7 3565 aa7.09□□□□□ -1.27
SYNE1-230ENST00000495090 UQCRQO14949 82 aa7.08□□□□□ -1.28
SYNE1-230ENST00000495090 TRACP01848 142 aa7.08□□□□□ -1.28
SYNE1-230ENST00000495090 ADORA2A-AS1P86434 159 aa7.08□□□□□ -1.28
SYNE1-230ENST00000495090 C3orf22Q8N5N4 141 aa7.08□□□□□ -1.28
SYNE1-230ENST00000495090 PIMREGQ9BSJ6 248 aa7.08□□□□□ -1.28
SYNE1-230ENST00000495090 PRRC2AP48634 2157 aaKnown RBP7.07□□□□□ -1.28
SYNE1-230ENST00000495090 K7ENP7 123 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 K7EQG2 157 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 CFHR3Q02985 330 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 CDSNQ15517 529 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 FAM222AQ5U5X8 452 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 Q6ZSV7 163 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 CHCHD7Q9BUK0 85 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 BPESC1Q9GZL8 116 aa7.07□□□□□ -1.28
SYNE1-230ENST00000495090 VPREB3Q9UKI3 123 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms