RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 COL5A1P20908 1838 aaPredicted RBP12.49□□□□□ -0.41
CCDC88B-209ENST00000494080 ODF3BA8MYP8 253 aa12.49□□□□□ -0.41
CCDC88B-209ENST00000494080 RNASE13Q5GAN3 156 aaKnown RBP12.49□□□□□ -0.41
CCDC88B-209ENST00000494080 CFHR3Q02985 330 aa12.49□□□□□ -0.41
CCDC88B-209ENST00000494080 BAALCQ8WXS3 180 aa12.49□□□□□ -0.41
CCDC88B-209ENST00000494080 TRIOO75962 3097 aa12.49□□□□□ -0.41
CCDC88B-209ENST00000494080 MALP21145 153 aa12.49□□□□□ -0.41
CCDC88B-209ENST00000494080 UNQ9165/PRO28630Q6UXU0 137 aa12.49□□□□□ -0.41
CCDC88B-209ENST00000494080 MUSTN1Q8IVN3 82 aa12.49□□□□□ -0.41
CCDC88B-209ENST00000494080 C11orf86A6NJI1 115 aa12.48□□□□□ -0.41
CCDC88B-209ENST00000494080 TCL1BO95988 128 aa12.48□□□□□ -0.41
CCDC88B-209ENST00000494080 RS1O15537 224 aa12.47□□□□□ -0.41
CCDC88B-209ENST00000494080 SLURP1P55000 103 aa12.47□□□□□ -0.41
CCDC88B-209ENST00000494080 RPL39P62891 51 aaKnown RBP12.47□□□□□ -0.41
CCDC88B-209ENST00000494080 CDH23Q9H251 3354 aa12.47□□□□□ -0.41
CCDC88B-209ENST00000494080 I3L3M4 83 aa12.47□□□□□ -0.41
CCDC88B-209ENST00000494080 RASL10AQ92737 203 aa12.47□□□□□ -0.41
CCDC88B-209ENST00000494080 RBAKDNA6NC62 111 aa12.47□□□□□ -0.41
CCDC88B-209ENST00000494080 CMC4P56277 68 aaPredicted RBP12.47□□□□□ -0.41
CCDC88B-209ENST00000494080 PAX4O43316 350 aa12.46□□□□□ -0.41
CCDC88B-209ENST00000494080 NDUFA11Q86Y39 141 aa12.46□□□□□ -0.41
CCDC88B-209ENST00000494080 IGHV3-38A0A0C4DH36 116 aa12.45□□□□□ -0.42
CCDC88B-209ENST00000494080 INAFM2P0DMQ5 153 aa12.45□□□□□ -0.42
CCDC88B-209ENST00000494080 IGHG2P01859 326 aa12.45□□□□□ -0.42
CCDC88B-209ENST00000494080 XIRP2A4UGR9 3374 aa12.45□□□□□ -0.42
CCDC88B-209ENST00000494080 A0A0J9YXV3 536 aa12.45□□□□□ -0.42
CCDC88B-209ENST00000494080 IGLV2-11P01706 119 aa12.45□□□□□ -0.42
CCDC88B-209ENST00000494080 IGLC6P0CF74 106 aa12.45□□□□□ -0.42
CCDC88B-209ENST00000494080 LEPROTO15243 131 aa12.45□□□□□ -0.42
CCDC88B-209ENST00000494080 MRPL23Q16540 153 aaKnown RBP12.45□□□□□ -0.42
CCDC88B-209ENST00000494080 TOMM6Q96B49 74 aa12.45□□□□□ -0.42
CCDC88B-209ENST00000494080 CRYGBP07316 175 aa12.44□□□□□ -0.42
CCDC88B-209ENST00000494080 C11orf71Q6IPW1 123 aa12.44□□□□□ -0.42
CCDC88B-209ENST00000494080 MRPL53Q96EL3 112 aaKnown RBP12.44□□□□□ -0.42
CCDC88B-209ENST00000494080 CCDC140Q96MF4 163 aa12.44□□□□□ -0.42
CCDC88B-209ENST00000494080 SPATA25Q9BR10 227 aa12.44□□□□□ -0.42
CCDC88B-209ENST00000494080 LENEPQ9Y5L5 61 aa12.44□□□□□ -0.42
CCDC88B-209ENST00000494080 LY6LH3BQJ8 138 aa12.43□□□□□ -0.42
CCDC88B-209ENST00000494080 IGHG4P01861 327 aa12.43□□□□□ -0.42
CCDC88B-209ENST00000494080 FAM236AA0A1B0GUQ0 79 aa12.43□□□□□ -0.42
CCDC88B-209ENST00000494080 FAM236BA0A1B0GV22 79 aa12.43□□□□□ -0.42
CCDC88B-209ENST00000494080 APRG1Q8IVJ8 170 aa12.43□□□□□ -0.42
CCDC88B-209ENST00000494080 NDUFV3P56181 108 aaKnown RBP12.42□□□□□ -0.42
CCDC88B-209ENST00000494080 COL4A2P08572 1712 aa12.42□□□□□ -0.42
CCDC88B-209ENST00000494080 IGHV4OR15-8A0A075B7B6 117 aa12.42□□□□□ -0.42
CCDC88B-209ENST00000494080 A0A087WW49 117 aa12.42□□□□□ -0.42
CCDC88B-209ENST00000494080 XGP55808 180 aa12.41□□□□□ -0.42
CCDC88B-209ENST00000494080 U3KQK5 164 aa12.41□□□□□ -0.42
CCDC88B-209ENST00000494080 RHODO00212 210 aa12.4□□□□□ -0.42
CCDC88B-209ENST00000494080 ZNRF2Q8NHG8 242 aa12.4□□□□□ -0.42
CCDC88B-209ENST00000494080 PIFOQ8TCI5 191 aa12.4□□□□□ -0.42
CCDC88B-209ENST00000494080 SUMO4Q6EEV6 95 aa12.4□□□□□ -0.42
CCDC88B-209ENST00000494080 GAS8-AS1O95177 125 aa12.4□□□□□ -0.43
CCDC88B-209ENST00000494080 FSTL3O95633 263 aa12.4□□□□□ -0.43
CCDC88B-209ENST00000494080 Q8N1Y9 231 aa12.4□□□□□ -0.43
CCDC88B-209ENST00000494080 A6NDX4 124 aa12.39□□□□□ -0.43
CCDC88B-209ENST00000494080 CCL24O00175 119 aa12.39□□□□□ -0.43
CCDC88B-209ENST00000494080 ICOSQ9Y6W8 199 aa12.39□□□□□ -0.43
CCDC88B-209ENST00000494080 RNF185Q96GF1 192 aa12.39□□□□□ -0.43
CCDC88B-209ENST00000494080 TMEM86BQ8N661 226 aa12.38□□□□□ -0.43
CCDC88B-209ENST00000494080 TRBV10-2A0A0K0K1G8 114 aa12.38□□□□□ -0.43
CCDC88B-209ENST00000494080 TRACP01848 142 aa12.37□□□□□ -0.43
CCDC88B-209ENST00000494080 RHOHQ15669 191 aa12.37□□□□□ -0.43
CCDC88B-209ENST00000494080 TEX49A0A1B0GTD5 131 aa12.37□□□□□ -0.43
CCDC88B-209ENST00000494080 CLEC2BQ92478 149 aa12.37□□□□□ -0.43
CCDC88B-209ENST00000494080 ACANP16112 2415 aa12.37□□□□□ -0.43
CCDC88B-209ENST00000494080 DEFB121Q5J5C9 76 aa12.37□□□□□ -0.43
CCDC88B-209ENST00000494080 CFAP126Q5VTH2 177 aa12.37□□□□□ -0.43
CCDC88B-209ENST00000494080 C6orf226Q5I0X4 101 aa12.36□□□□□ -0.43
CCDC88B-209ENST00000494080 C9orf47Q6ZRZ4 202 aa12.36□□□□□ -0.43
CCDC88B-209ENST00000494080 BAALC-AS2P0C853 105 aa12.36□□□□□ -0.43
CCDC88B-209ENST00000494080 OPRPNQ99935 248 aaPredicted RBP12.36□□□□□ -0.43
CCDC88B-209ENST00000494080 CFAP54Q96N23 3096 aa12.36□□□□□ -0.43
CCDC88B-209ENST00000494080 DAND5Q8N907 189 aa12.36□□□□□ -0.43
CCDC88B-209ENST00000494080 HHLA3Q9XRX5 114 aa12.36□□□□□ -0.43
CCDC88B-209ENST00000494080 AGRNO00468 2067 aa12.35□□□□□ -0.43
CCDC88B-209ENST00000494080 RPL32P62910 135 aaKnown RBP12.35□□□□□ -0.43
CCDC88B-209ENST00000494080 EBI3Q14213 229 aa12.35□□□□□ -0.43
CCDC88B-209ENST00000494080 OVOL2Q9BRP0 275 aa12.35□□□□□ -0.43
CCDC88B-209ENST00000494080 SOCS3O14543 225 aa12.35□□□□□ -0.43
CCDC88B-209ENST00000494080 TNFRSF13BO14836 293 aaPredicted RBP12.35□□□□□ -0.43
CCDC88B-209ENST00000494080 NEXN-AS1Q8NBZ9 246 aa12.35□□□□□ -0.43
CCDC88B-209ENST00000494080 TMEM126AQ9H061 195 aa12.35□□□□□ -0.43
CCDC88B-209ENST00000494080 JPT2Q9H910 190 aa12.35□□□□□ -0.43
CCDC88B-209ENST00000494080 GPHB5Q86YW7 130 aa12.34□□□□□ -0.43
CCDC88B-209ENST00000494080 A0A096LNJ9 63 aa12.34□□□□□ -0.43
CCDC88B-209ENST00000494080 TIMM17AQ99595 171 aa12.34□□□□□ -0.43
CCDC88B-209ENST00000494080 A0A0J9YY99 117 aa12.34□□□□□ -0.43
CCDC88B-209ENST00000494080 SPANXDQ9BXN6 97 aa12.34□□□□□ -0.43
CCDC88B-209ENST00000494080 A0A1W2PPR1 153 aa12.33□□□□□ -0.43
CCDC88B-209ENST00000494080 SRSF2Q01130 221 aaKnown RBP12.33□□□□□ -0.43
CCDC88B-209ENST00000494080 S100A7L2Q5SY68 101 aa12.33□□□□□ -0.43
CCDC88B-209ENST00000494080 CCDC179H3BU77 68 aa12.33□□□□□ -0.44
CCDC88B-209ENST00000494080 Q9H8V8 135 aa12.33□□□□□ -0.44
CCDC88B-209ENST00000494080 U3KQE9 123 aa12.33□□□□□ -0.44
CCDC88B-209ENST00000494080 ACYP1P07311 99 aa12.33□□□□□ -0.44
CCDC88B-209ENST00000494080 H3BT86 120 aa12.32□□□□□ -0.44
CCDC88B-209ENST00000494080 K7EMT4 169 aa12.32□□□□□ -0.44
CCDC88B-209ENST00000494080 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.32□□□□□ -0.44
CCDC88B-209ENST00000494080 IGKV2-29A2NJV5 120 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms