RNA–Protein interactions for RNA: ENST00000492170.1

MRPL55-231, Transcript of mitochondrial ribosomal protein L55, human

TSL 5

Gene MRPL55, Length 241 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-231	ENST00000492170	PHLDA3	Q9Y5J5	127 aa		10.14	□□□□□ -0.79
MRPL55-231	ENST00000492170		K7EN84	100 aa		10.13	□□□□□ -0.79
MRPL55-231	ENST00000492170	PLA2G1B	P04054	148 aa	Known RBP	10.13	□□□□□ -0.79
MRPL55-231	ENST00000492170	SRP19	P09132	144 aa	Known RBP	10.13	□□□□□ -0.79
MRPL55-231	ENST00000492170	ZFP82	Q8N141	532 aa		10.13	□□□□□ -0.79
MRPL55-231	ENST00000492170	OCC1	Q8TAD7	63 aa		10.13	□□□□□ -0.79
MRPL55-231	ENST00000492170		A0A087WWL8	130 aa		10.12	□□□□□ -0.79
MRPL55-231	ENST00000492170		P01737	135 aa		10.12	□□□□□ -0.79
MRPL55-231	ENST00000492170	IGLC6	P0CF74	106 aa		10.12	□□□□□ -0.79
MRPL55-231	ENST00000492170	RPS20	P60866	119 aa	Known RBP	10.12	□□□□□ -0.79
MRPL55-231	ENST00000492170	NIT1	Q86X76	327 aa		10.12	□□□□□ -0.79
MRPL55-231	ENST00000492170	OR10AG1	Q8NH19	301 aa		10.12	□□□□□ -0.79
MRPL55-231	ENST00000492170	BAALC	Q8WXS3	180 aa		10.12	□□□□□ -0.79
MRPL55-231	ENST00000492170	DAZAP1	Q96EP5	407 aa	Known RBP	10.12	□□□□□ -0.79
MRPL55-231	ENST00000492170	SFRP2	Q96HF1	295 aa		10.12	□□□□□ -0.79
MRPL55-231	ENST00000492170	IGKV2D-24	A0A075B6R9	120 aa		10.11	□□□□□ -0.79
MRPL55-231	ENST00000492170		J3QL48	77 aa		10.11	□□□□□ -0.79
MRPL55-231	ENST00000492170		M0R381	172 aa		10.11	□□□□□ -0.79
MRPL55-231	ENST00000492170	KCNIP4	Q6PIL6	250 aa		10.11	□□□□□ -0.79
MRPL55-231	ENST00000492170	LINC00528	Q8N1L1	170 aa		10.11	□□□□□ -0.79
MRPL55-231	ENST00000492170	OR2D3	Q8NGH3	330 aa		10.11	□□□□□ -0.79
MRPL55-231	ENST00000492170	CHCHD7	Q9BUK0	85 aa		10.11	□□□□□ -0.79
MRPL55-231	ENST00000492170		A0A087WX48	190 aa		10.1	□□□□□ -0.79
MRPL55-231	ENST00000492170	TRBV10-1	A0A0K0K1A3	114 aa		10.1	□□□□□ -0.79
MRPL55-231	ENST00000492170	RPL36A	P83881	106 aa	Known RBP	10.1	□□□□□ -0.79
MRPL55-231	ENST00000492170	ELOB	Q15370	118 aa		10.1	□□□□□ -0.79
MRPL55-231	ENST00000492170		Q8N976	141 aa		10.1	□□□□□ -0.79
MRPL55-231	ENST00000492170	NUDT10	Q8NFP7	164 aa		10.1	□□□□□ -0.79
MRPL55-231	ENST00000492170	RPL36AL	Q969Q0	106 aa	Known RBP	10.1	□□□□□ -0.79
MRPL55-231	ENST00000492170	NUDT11	Q96G61	164 aa		10.1	□□□□□ -0.79
MRPL55-231	ENST00000492170	SMDT1	Q9H4I9	107 aa		10.1	□□□□□ -0.79
MRPL55-231	ENST00000492170	KLK12	Q9UKR0	248 aa		10.1	□□□□□ -0.79
MRPL55-231	ENST00000492170	FAM231D	Q6ZW35	169 aa		10.09	□□□□□ -0.79
MRPL55-231	ENST00000492170	FER1L6-AS1	Q8NA97	138 aa		10.09	□□□□□ -0.79
MRPL55-231	ENST00000492170	UBE2W	Q96B02	151 aa		10.09	□□□□□ -0.79
MRPL55-231	ENST00000492170	SMIM7	Q9BQ49	75 aa		10.09	□□□□□ -0.79
MRPL55-231	ENST00000492170	RNASE7	Q9H1E1	156 aa	Known RBP	10.09	□□□□□ -0.79
MRPL55-231	ENST00000492170	XKRY2	A2RUG3	117 aa		10.08	□□□□□ -0.8
MRPL55-231	ENST00000492170		C9JQL5	133 aa		10.08	□□□□□ -0.8
MRPL55-231	ENST00000492170	GZMB	P10144	247 aa		10.08	□□□□□ -0.8
MRPL55-231	ENST00000492170	CEBPG	P53567	150 aa		10.08	□□□□□ -0.8
MRPL55-231	ENST00000492170	SRSF3	P84103	164 aa	Known RBP	10.08	□□□□□ -0.8
MRPL55-231	ENST00000492170	LINC01551	Q86U37	167 aa		10.08	□□□□□ -0.8
MRPL55-231	ENST00000492170	DNAJC30	Q96LL9	226 aa		10.08	□□□□□ -0.8
MRPL55-231	ENST00000492170	RPP21	Q9H633	154 aa	Known RBP	10.08	□□□□□ -0.8
MRPL55-231	ENST00000492170	TRBV7-3	A0A075B6L6	115 aa		10.07	□□□□□ -0.8
MRPL55-231	ENST00000492170	ZNF727	A8MUV8	499 aa		10.07	□□□□□ -0.8
MRPL55-231	ENST00000492170	UBE2D3	P61077	147 aa		10.07	□□□□□ -0.8
MRPL55-231	ENST00000492170	UBE2D2	P62837	147 aa		10.07	□□□□□ -0.8
MRPL55-231	ENST00000492170	PEA15	Q15121	130 aa		10.07	□□□□□ -0.8
MRPL55-231	ENST00000492170	LINC01620	Q4KN68	170 aa		10.07	□□□□□ -0.8
MRPL55-231	ENST00000492170	SPANXN1	Q5VSR9	72 aa		10.07	□□□□□ -0.8
MRPL55-231	ENST00000492170		F2Z2F3	143 aa		10.06	□□□□□ -0.8
MRPL55-231	ENST00000492170	CTRL	P40313	264 aa		10.06	□□□□□ -0.8
MRPL55-231	ENST00000492170		Q0VG73	95 aa		10.06	□□□□□ -0.8
MRPL55-231	ENST00000492170	FAM74A3	Q4VXF1	159 aa		10.06	□□□□□ -0.8
MRPL55-231	ENST00000492170	SCX	Q7RTU7	201 aa		10.06	□□□□□ -0.8
MRPL55-231	ENST00000492170	DEFB104A	Q8WTQ1	72 aa		10.06	□□□□□ -0.8
MRPL55-231	ENST00000492170	CNFN	Q9BYD5	112 aa		10.06	□□□□□ -0.8
MRPL55-231	ENST00000492170	MUC21	A0A0G2JKD1	596 aa		10.05	□□□□□ -0.8
MRPL55-231	ENST00000492170	MUC21	A0A140T8X8	626 aa		10.05	□□□□□ -0.8
MRPL55-231	ENST00000492170	CACNG7	P62955	275 aa		10.05	□□□□□ -0.8
MRPL55-231	ENST00000492170	IFITM2	Q01629	132 aa		10.05	□□□□□ -0.8
MRPL55-231	ENST00000492170	CT83	Q5H943	113 aa		10.05	□□□□□ -0.8
MRPL55-231	ENST00000492170	ATRAID	Q6UW56	229 aa		10.05	□□□□□ -0.8
MRPL55-231	ENST00000492170	OR10G8	Q8NGN5	311 aa		10.05	□□□□□ -0.8
MRPL55-231	ENST00000492170	KIF25-AS1	Q9Y6Z4	181 aa		10.05	□□□□□ -0.8
MRPL55-231	ENST00000492170	TMEM262	E9PQX1	116 aa		10.04	□□□□□ -0.8
MRPL55-231	ENST00000492170	CRP	P02741	224 aa		10.04	□□□□□ -0.8
MRPL55-231	ENST00000492170	RAB4B	P61018	213 aa		10.04	□□□□□ -0.8
MRPL55-231	ENST00000492170	ZNF56	Q15929	161 aa		10.04	□□□□□ -0.8
MRPL55-231	ENST00000492170	C14orf177	Q52M58	125 aa		10.04	□□□□□ -0.8
MRPL55-231	ENST00000492170	WDR73	Q6P4I2	378 aa		10.04	□□□□□ -0.8
MRPL55-231	ENST00000492170	AP1S3	Q96PC3	154 aa		10.04	□□□□□ -0.8
MRPL55-231	ENST00000492170	CHAC1	Q9BUX1	264 aa		10.04	□□□□□ -0.8
MRPL55-231	ENST00000492170	C1orf43	Q9BWL3	253 aa		10.04	□□□□□ -0.8
MRPL55-231	ENST00000492170	TRBV6-8	A0A0A6YYG3	113 aa		10.03	□□□□□ -0.8
MRPL55-231	ENST00000492170	KRTAP29-1	A8MX34	341 aa	Predicted RBP	10.03	□□□□□ -0.8
MRPL55-231	ENST00000492170	GATC	O43716	136 aa	Known RBP	10.03	□□□□□ -0.8
MRPL55-231	ENST00000492170	RAB14	P61106	215 aa		10.03	□□□□□ -0.8
MRPL55-231	ENST00000492170	CLLU1	Q5K131	121 aa		10.03	□□□□□ -0.8
MRPL55-231	ENST00000492170	LYZL1	Q6UWQ5	148 aa		10.03	□□□□□ -0.8
MRPL55-231	ENST00000492170	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	10.03	□□□□□ -0.8
MRPL55-231	ENST00000492170	GTSF1	Q8WW33	167 aa		10.03	□□□□□ -0.8
MRPL55-231	ENST00000492170	TPPP3	Q9BW30	176 aa		10.03	□□□□□ -0.8
MRPL55-231	ENST00000492170	OSTC	Q9NRP0	149 aa		10.03	□□□□□ -0.8
MRPL55-231	ENST00000492170	FOXA3	P55318	350 aa	Predicted RBP	10.02	□□□□□ -0.81
MRPL55-231	ENST00000492170	PKIA	P61925	76 aa		10.02	□□□□□ -0.81
MRPL55-231	ENST00000492170	RPL23	P62829	140 aa	Known RBP	10.02	□□□□□ -0.81
MRPL55-231	ENST00000492170	TMEM241	Q24JQ0	296 aa		10.02	□□□□□ -0.81
MRPL55-231	ENST00000492170	C15orf54	Q8N8G6	183 aa		10.02	□□□□□ -0.81
MRPL55-231	ENST00000492170	NEXN-AS1	Q8NBZ9	246 aa		10.02	□□□□□ -0.81
MRPL55-231	ENST00000492170	ISOC2	Q96AB3	205 aa		10.02	□□□□□ -0.81
MRPL55-231	ENST00000492170	NAT8	Q9UHE5	227 aa		10.02	□□□□□ -0.81
MRPL55-231	ENST00000492170		A8MWL6	223 aa		10.01	□□□□□ -0.81
MRPL55-231	ENST00000492170	ANG	P03950	147 aa	Known RBP	10	□□□□□ -0.81
MRPL55-231	ENST00000492170	NTF3	P20783	257 aa		10	□□□□□ -0.81
MRPL55-231	ENST00000492170	SST	P61278	116 aa		10	□□□□□ -0.81
MRPL55-231	ENST00000492170	MPV17L2	Q567V2	206 aa		10	□□□□□ -0.81
MRPL55-231	ENST00000492170	ENHO	Q6UWT2	76 aa		10	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms