RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 HIGD1CA8MV81 97 aa11.06□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 K7EP13 123 aa11.06□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 LINC01556Q5JQF7 62 aa11.06□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 SMIM15Q7Z3B0 74 aa11.06□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 FRAS1Q86XX4 4008 aa11.06□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 M0QY20 66 aa11.05□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 C10orf126Q8N4M7 172 aa11.05□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 A0A1B0GUT8 65 aa11.04□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.04□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 DNAJC30Q96LL9 226 aa11.04□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 TNFRSF18Q9Y5U5 241 aa11.04□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 RASL11AQ6T310 242 aa11.03□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 NAT8BQ9UHF3 227 aa11.03□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 EPPK1P58107 5090 aaKnown RBP11.03□□□□□ -0.64
MSH5-SAPCD1-206ENST00000491552 IGHV3-30P01768 117 aa11.02□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 IGHV3-33P01772 117 aa11.02□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 IGHV3-30-3P0DP02 117 aa11.02□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 IGHV3-30-5P0DP03 117 aa11.02□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 DAZ4Q86SG3 579 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 NUP35Q8NFH5 326 aa11.02□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 DAZ3Q9NR90 486 aaKnown RBP11.02□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 A0A1B0GVY2 172 aa11.01□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 SMIM27A0A1W2PRY6 76 aa11.01□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 TNP2Q05952 138 aa11.01□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 PNRC1Q12796 327 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 RIGQ13278 110 aa11.01□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 UQCC3Q6UW78 93 aa11.01□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 NFE4Q86UQ8 179 aa11.01□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 DNAH17Q9UFH2 4485 aa11□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 TRBV6-8A0A0A6YYG3 113 aa11□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 TRAV26-2A0A0B4J265 109 aa11□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 TMEM97Q5BJF2 176 aa11□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 GATD1Q8NB37 220 aa11□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 NIT2Q9NQR4 276 aa11□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 FAT2Q9NYQ8 4349 aa10.99□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 IBA57-AS1B1ANH7 110 aa10.99□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 Q6ZRN7 208 aaPredicted RBP10.99□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 NIT1Q86X76 327 aa10.99□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 Q8N3U1 123 aa10.99□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 FRZBQ92765 325 aa10.99□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 TMEM191AQ9H0A3 160 aa10.99□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 PPP1R2P9O14990 202 aa10.98□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 URGCP-MRPS24S4R325 110 aa10.98□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 KCNIP4Q6PIL6 250 aa10.97□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 NTM-AS1Q6ZSK4 140 aa10.97□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 COMMD7Q86VX2 200 aa10.97□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 CHCHD7Q9BUK0 85 aa10.97□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 TRBV25-1A0A075B6N4 114 aa10.96□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 TMEM218A2RU14 115 aa10.96□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 LAGE3Q14657 143 aa10.96□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 RPL39LQ96EH5 51 aaKnown RBP10.96□□□□□ -0.65
MSH5-SAPCD1-206ENST00000491552 A0A087WX48 190 aa10.95□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 A0A1B0GW15 77 aa10.95□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 ADCYAP1P18509 176 aa10.95□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 AMN1Q8IY45 258 aa10.95□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 ANAPC16Q96DE5 110 aa10.95□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 RNF185Q96GF1 192 aa10.95□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 CHCHD5Q9BSY4 110 aa10.95□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 Q9HAA7 133 aa10.95□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 HECTD4Q9Y4D8 3996 aa10.94□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 IGHV1-24A0A0C4DH33 117 aa10.94□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 LINC00862A6NCI5 91 aa10.94□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 TMEM262E9PQX1 116 aa10.94□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 F8W036 122 aa10.94□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 MT-ND4LP03901 98 aa10.94□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 RAB4AP20338 218 aa10.94□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 PKIAP61925 76 aa10.94□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 IQCJQ1A5X6 159 aa10.94□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 MRAP2Q96G30 205 aa10.94□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 COTL1Q14019 142 aa10.93□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 ELOBQ15370 118 aa10.93□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 MRPL54Q6P161 138 aaKnown RBP10.93□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 TRBV6-5A0A0K0K1A5 114 aa10.92□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 S100A8P05109 93 aa10.92□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 CAMPP49913 170 aa10.92□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 HBBP68871 147 aa10.92□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 MPV17L2Q567V2 206 aa10.92□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 KLK12Q9UKR0 248 aa10.92□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 TRAV8-3A0A0A6YYJ7 113 aa10.91□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 A0A1B0GXF2 115 aa10.91□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 GAS8-AS1O95177 125 aa10.91□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 GAGE6Q13070 117 aa10.91□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 TMEM243Q9BU79 118 aa10.91□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 SEC11CQ9BY50 192 aa10.91□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 BIRC6Q9NR09 4857 aa10.9□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 SDHAF1A6NFY7 115 aa10.9□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 PSCAO43653 123 aa10.9□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 AMTP48728 403 aa10.9□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 FAM104BQ5XKR9 115 aa10.9□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 ATP5L2Q7Z4Y8 100 aa10.9□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 DEFB104AQ8WTQ1 72 aa10.9□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 ST20Q9HBF5 79 aa10.9□□□□□ -0.66
MSH5-SAPCD1-206ENST00000491552 SMKR1H3BMG3 65 aa10.89□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 EREGO14944 169 aa10.89□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 NCR2O95944 276 aa10.89□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 RPS10P46783 165 aaKnown RBP10.89□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 MRPL51Q4U2R6 128 aaKnown RBP10.89□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 ATRAIDQ6UW56 229 aa10.89□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 TM2D2Q9BX73 214 aa10.89□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 PKD1P98161 4303 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms