RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CHCHD5Q9BSY4 110 aa8□□□□□ -1.13
CPSF3-204ENST00000489403 MUC21A0A0G2JKD1 596 aa7.99□□□□□ -1.13
CPSF3-204ENST00000489403 MUC21A0A140T8X8 626 aa7.99□□□□□ -1.13
CPSF3-204ENST00000489403 SCO2A0A1W2PP80 73 aa7.99□□□□□ -1.13
CPSF3-204ENST00000489403 PRSS1P07477 247 aa7.99□□□□□ -1.13
CPSF3-204ENST00000489403 MIAQ16674 131 aa7.99□□□□□ -1.13
CPSF3-204ENST00000489403 CLPSL2Q6UWE3 100 aa7.99□□□□□ -1.13
CPSF3-204ENST00000489403 MLST8Q9BVC4 326 aa7.99□□□□□ -1.13
CPSF3-204ENST00000489403 SSBP4Q9BWG4 385 aaPredicted RBP7.99□□□□□ -1.13
CPSF3-204ENST00000489403 ZNF471Q9BX82 626 aaPredicted RBP7.99□□□□□ -1.13
CPSF3-204ENST00000489403 PRR34Q9NV39 138 aa7.99□□□□□ -1.13
CPSF3-204ENST00000489403 ARPC5O15511 151 aa7.98□□□□□ -1.13
CPSF3-204ENST00000489403 PKIAP61925 76 aa7.98□□□□□ -1.13
CPSF3-204ENST00000489403 SPANXN1Q5VSR9 72 aa7.98□□□□□ -1.13
CPSF3-204ENST00000489403 DGAT2L7PQ6IED9 249 aa7.98□□□□□ -1.13
CPSF3-204ENST00000489403 KRTAP26-1Q6PEX3 210 aa7.98□□□□□ -1.13
CPSF3-204ENST00000489403 C9orf163Q8N9P6 203 aa7.98□□□□□ -1.13
CPSF3-204ENST00000489403 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.98□□□□□ -1.13
CPSF3-204ENST00000489403 DAZAP1Q96EP5 407 aaKnown RBP7.98□□□□□ -1.13
CPSF3-204ENST00000489403 VAX2Q9UIW0 290 aa7.98□□□□□ -1.13
CPSF3-204ENST00000489403 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.98□□□□□ -1.13
CPSF3-204ENST00000489403 PANO1I0J062 215 aa7.97□□□□□ -1.13
CPSF3-204ENST00000489403 S100A9P06702 114 aaKnown RBP7.97□□□□□ -1.13
CPSF3-204ENST00000489403 OR5AL1P0C617 328 aa7.97□□□□□ -1.13
CPSF3-204ENST00000489403 RBX1P62877 108 aa7.97□□□□□ -1.13
CPSF3-204ENST00000489403 TMEM97Q5BJF2 176 aa7.97□□□□□ -1.13
CPSF3-204ENST00000489403 BAGE2Q86Y30 109 aa7.97□□□□□ -1.13
CPSF3-204ENST00000489403 DERL1Q9BUN8 251 aa7.97□□□□□ -1.13
CPSF3-204ENST00000489403 PLA2G2DQ9UNK4 145 aa7.97□□□□□ -1.13
CPSF3-204ENST00000489403 KIF25-AS1Q9Y6Z4 181 aa7.97□□□□□ -1.13
CPSF3-204ENST00000489403 A0A1B0GV50 99 aa7.96□□□□□ -1.14
CPSF3-204ENST00000489403 F5H697 171 aa7.96□□□□□ -1.14
CPSF3-204ENST00000489403 SSTP61278 116 aa7.96□□□□□ -1.14
CPSF3-204ENST00000489403 GAGE6Q13070 117 aa7.96□□□□□ -1.14
CPSF3-204ENST00000489403 LINC00269Q8N2A0 174 aa7.96□□□□□ -1.14
CPSF3-204ENST00000489403 TRBV25-1A0A075B6N4 114 aa7.95□□□□□ -1.14
CPSF3-204ENST00000489403 PFDN1O60925 122 aa7.95□□□□□ -1.14
CPSF3-204ENST00000489403 FAM213BQ8TBF2 198 aa7.95□□□□□ -1.14
CPSF3-204ENST00000489403 SFT2D1Q8WV19 159 aa7.95□□□□□ -1.14
CPSF3-204ENST00000489403 MBD3L1Q8WWY6 194 aa7.95□□□□□ -1.14
CPSF3-204ENST00000489403 AP1S3Q96PC3 154 aa7.95□□□□□ -1.14
CPSF3-204ENST00000489403 BATF3Q9NR55 127 aa7.95□□□□□ -1.14
CPSF3-204ENST00000489403 SMLR1H3BR10 107 aa7.94□□□□□ -1.14
CPSF3-204ENST00000489403 SMIM17P0DL12 118 aa7.94□□□□□ -1.14
CPSF3-204ENST00000489403 IQCJQ1A5X6 159 aa7.94□□□□□ -1.14
CPSF3-204ENST00000489403 SDIM1Q6ZPB5 146 aa7.94□□□□□ -1.14
CPSF3-204ENST00000489403 IGLV10-54A0A075B6I4 117 aa7.93□□□□□ -1.14
CPSF3-204ENST00000489403 IGHV1-24A0A0C4DH33 117 aa7.93□□□□□ -1.14
CPSF3-204ENST00000489403 REG3AQ06141 175 aa7.93□□□□□ -1.14
CPSF3-204ENST00000489403 UMAD1C9J7I0 102 aa7.92□□□□□ -1.14
CPSF3-204ENST00000489403 M0QY20 66 aa7.92□□□□□ -1.14
CPSF3-204ENST00000489403 MGPP08493 103 aa7.92□□□□□ -1.14
CPSF3-204ENST00000489403 MT1HL1P0DM35 61 aa7.92□□□□□ -1.14
CPSF3-204ENST00000489403 CIRBPQ14011 172 aaKnown RBP7.92□□□□□ -1.14
CPSF3-204ENST00000489403 ZNF345Q14585 488 aa7.92□□□□□ -1.14
CPSF3-204ENST00000489403 TMUB2Q71RG4 321 aa7.92□□□□□ -1.14
CPSF3-204ENST00000489403 KCNRGQ8N5I3 272 aa7.92□□□□□ -1.14
CPSF3-204ENST00000489403 C20orf203Q8NBC4 194 aa7.92□□□□□ -1.14
CPSF3-204ENST00000489403 CLRN3Q8NCR9 226 aa7.92□□□□□ -1.14
CPSF3-204ENST00000489403 IGLV4-60A0A075B6I1 120 aa7.91□□□□□ -1.14
CPSF3-204ENST00000489403 IGLC6P0CF74 106 aa7.91□□□□□ -1.14
CPSF3-204ENST00000489403 GZMBP10144 247 aa7.91□□□□□ -1.14
CPSF3-204ENST00000489403 RPL35P42766 123 aaKnown RBP7.91□□□□□ -1.14
CPSF3-204ENST00000489403 CNBPP62633 177 aaKnown RBP7.91□□□□□ -1.14
CPSF3-204ENST00000489403 SUMO4Q6EEV6 95 aa7.91□□□□□ -1.14
CPSF3-204ENST00000489403 TPPP3Q9BW30 176 aa7.91□□□□□ -1.14
CPSF3-204ENST00000489403 GFRA4Q9GZZ7 299 aa7.91□□□□□ -1.14
CPSF3-204ENST00000489403 A0A0D9SG52 128 aa7.9□□□□□ -1.14
CPSF3-204ENST00000489403 hDV102S1A0JD36 115 aa7.9□□□□□ -1.14
CPSF3-204ENST00000489403 H2AFB1P0C5Y9 115 aa7.9□□□□□ -1.14
CPSF3-204ENST00000489403 FER1L6-AS1Q8NA97 138 aa7.9□□□□□ -1.14
CPSF3-204ENST00000489403 C11orf52Q96A22 123 aa7.9□□□□□ -1.14
CPSF3-204ENST00000489403 TRAV8-4A0A0B4J246 113 aa7.89□□□□□ -1.15
CPSF3-204ENST00000489403 A0A1B0GUV1 79 aa7.89□□□□□ -1.15
CPSF3-204ENST00000489403 H7C1H1 209 aa7.89□□□□□ -1.15
CPSF3-204ENST00000489403 P01737 135 aa7.89□□□□□ -1.15
CPSF3-204ENST00000489403 SLPIP03973 132 aa7.89□□□□□ -1.15
CPSF3-204ENST00000489403 NKX2-5P52952 324 aaPredicted RBP7.89□□□□□ -1.15
CPSF3-204ENST00000489403 Q6ZRU5 148 aa7.89□□□□□ -1.15
CPSF3-204ENST00000489403 TMEM243Q9BU79 118 aa7.89□□□□□ -1.15
CPSF3-204ENST00000489403 IGHV3-64A0A075B6Q5 118 aa7.88□□□□□ -1.15
CPSF3-204ENST00000489403 C19orf71A6NCJ1 209 aa7.88□□□□□ -1.15
CPSF3-204ENST00000489403 BCL2L11O43521 198 aa7.88□□□□□ -1.15
CPSF3-204ENST00000489403 CHTF8P0CG12 524 aa7.88□□□□□ -1.15
CPSF3-204ENST00000489403 RPS20P60866 119 aaKnown RBP7.88□□□□□ -1.15
CPSF3-204ENST00000489403 RGS21Q2M5E4 152 aa7.88□□□□□ -1.15
CPSF3-204ENST00000489403 CENPWQ5EE01 88 aa7.88□□□□□ -1.15
CPSF3-204ENST00000489403 OR2D3Q8NGH3 330 aa7.88□□□□□ -1.15
CPSF3-204ENST00000489403 SPACA4Q8TDM5 124 aa7.88□□□□□ -1.15
CPSF3-204ENST00000489403 GNG13Q9P2W3 67 aa7.88□□□□□ -1.15
CPSF3-204ENST00000489403 A0A087WYN8 130 aa7.87□□□□□ -1.15
CPSF3-204ENST00000489403 RAB5CP51148 216 aa7.87□□□□□ -1.15
CPSF3-204ENST00000489403 CACNG7P62955 275 aa7.87□□□□□ -1.15
CPSF3-204ENST00000489403 CCL20P78556 96 aa7.87□□□□□ -1.15
CPSF3-204ENST00000489403 RASL11AQ6T310 242 aa7.87□□□□□ -1.15
CPSF3-204ENST00000489403 PGLYRP4Q96LB8 373 aa7.87□□□□□ -1.15
CPSF3-204ENST00000489403 MANBALQ9NQG1 85 aa7.87□□□□□ -1.15
CPSF3-204ENST00000489403 AP5S1Q9NUS5 200 aa7.87□□□□□ -1.15
CPSF3-204ENST00000489403 TNXBP22105 4242 aa7.86□□□□□ -1.15
CPSF3-204ENST00000489403 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms