RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	SPANXN1	Q5VSR9	72 aa		11.92	□□□□□ -0.5
HDAC6-231	ENST00000488905	MLST8	Q9BVC4	326 aa		11.92	□□□□□ -0.5
HDAC6-231	ENST00000488905	SSBP4	Q9BWG4	385 aa	Predicted RBP	11.92	□□□□□ -0.5
HDAC6-231	ENST00000488905	MUC21	A0A0G2JKD1	596 aa		11.91	□□□□□ -0.5
HDAC6-231	ENST00000488905	MUC21	A0A140T8X8	626 aa		11.91	□□□□□ -0.5
HDAC6-231	ENST00000488905	PFDN1	O60925	122 aa		11.91	□□□□□ -0.5
HDAC6-231	ENST00000488905	TMEM97	Q5BJF2	176 aa		11.91	□□□□□ -0.5
HDAC6-231	ENST00000488905	VAX2	Q9UIW0	290 aa		11.91	□□□□□ -0.5
HDAC6-231	ENST00000488905		A0A1B0GV50	99 aa		11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905		F5H697	171 aa		11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905	PRSS1	P07477	247 aa		11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905	RPL37A	P61513	92 aa	Known RBP	11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905	CLPSL2	Q6UWE3	100 aa		11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905	NTM-AS1	Q6ZSK4	140 aa		11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905	BAGE2	Q86Y30	109 aa		11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905	FAM213B	Q8TBF2	198 aa		11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905	SFT2D1	Q8WV19	159 aa		11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905	AP1S3	Q96PC3	154 aa		11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905	PRR34	Q9NV39	138 aa		11.9	□□□□□ -0.5
HDAC6-231	ENST00000488905	MBD3L1	Q8WWY6	194 aa		11.89	□□□□□ -0.51
HDAC6-231	ENST00000488905	TRBV25-1	A0A075B6N4	114 aa		11.88	□□□□□ -0.51
HDAC6-231	ENST00000488905	UMAD1	C9J7I0	102 aa		11.88	□□□□□ -0.51
HDAC6-231	ENST00000488905	SMIM17	P0DL12	118 aa		11.88	□□□□□ -0.51
HDAC6-231	ENST00000488905	RBX1	P62877	108 aa		11.88	□□□□□ -0.51
HDAC6-231	ENST00000488905	ZNF345	Q14585	488 aa		11.88	□□□□□ -0.51
HDAC6-231	ENST00000488905	DGAT2L7P	Q6IED9	249 aa		11.88	□□□□□ -0.51
HDAC6-231	ENST00000488905	DERL1	Q9BUN8	251 aa		11.88	□□□□□ -0.51
HDAC6-231	ENST00000488905	KIF25-AS1	Q9Y6Z4	181 aa		11.88	□□□□□ -0.51
HDAC6-231	ENST00000488905	SMLR1	H3BR10	107 aa		11.87	□□□□□ -0.51
HDAC6-231	ENST00000488905	SST	P61278	116 aa		11.87	□□□□□ -0.51
HDAC6-231	ENST00000488905	GAGE6	Q13070	117 aa		11.87	□□□□□ -0.51
HDAC6-231	ENST00000488905	LINC00269	Q8N2A0	174 aa		11.87	□□□□□ -0.51
HDAC6-231	ENST00000488905	KCNRG	Q8N5I3	272 aa		11.87	□□□□□ -0.51
HDAC6-231	ENST00000488905	C9orf163	Q8N9P6	203 aa		11.87	□□□□□ -0.51
HDAC6-231	ENST00000488905	KRTAP26-1	Q6PEX3	210 aa		11.86	□□□□□ -0.51
HDAC6-231	ENST00000488905	HNRNPA3	P51991	378 aa	Known RBP	11.85	□□□□□ -0.51
HDAC6-231	ENST00000488905	IQCJ	Q1A5X6	159 aa		11.85	□□□□□ -0.51
HDAC6-231	ENST00000488905	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	11.85	□□□□□ -0.51
HDAC6-231	ENST00000488905	IGHV1-24	A0A0C4DH33	117 aa		11.84	□□□□□ -0.51
HDAC6-231	ENST00000488905	RPL35	P42766	123 aa	Known RBP	11.84	□□□□□ -0.51
HDAC6-231	ENST00000488905	TMUB2	Q71RG4	321 aa		11.84	□□□□□ -0.51
HDAC6-231	ENST00000488905	MGP	P08493	103 aa		11.83	□□□□□ -0.52
HDAC6-231	ENST00000488905	H2AFB1	P0C5Y9	115 aa		11.83	□□□□□ -0.52
HDAC6-231	ENST00000488905	RGS21	Q2M5E4	152 aa		11.83	□□□□□ -0.52
HDAC6-231	ENST00000488905	DAZAP1	Q96EP5	407 aa	Known RBP	11.83	□□□□□ -0.52
HDAC6-231	ENST00000488905	PLA2G2D	Q9UNK4	145 aa		11.83	□□□□□ -0.52
HDAC6-231	ENST00000488905	PANO1	I0J062	215 aa		11.82	□□□□□ -0.52
HDAC6-231	ENST00000488905		M0QY20	66 aa		11.82	□□□□□ -0.52
HDAC6-231	ENST00000488905	BCL2L11	O43521	198 aa		11.82	□□□□□ -0.52
HDAC6-231	ENST00000488905	REG3A	Q06141	175 aa		11.82	□□□□□ -0.52
HDAC6-231	ENST00000488905	IGLV10-54	A0A075B6I4	117 aa		11.81	□□□□□ -0.52
HDAC6-231	ENST00000488905		H7C1H1	209 aa		11.81	□□□□□ -0.52
HDAC6-231	ENST00000488905	IGLC6	P0CF74	106 aa		11.81	□□□□□ -0.52
HDAC6-231	ENST00000488905	GZMB	P10144	247 aa		11.81	□□□□□ -0.52
HDAC6-231	ENST00000488905	CNBP	P62633	177 aa	Known RBP	11.81	□□□□□ -0.52
HDAC6-231	ENST00000488905	SUMO4	Q6EEV6	95 aa		11.81	□□□□□ -0.52
HDAC6-231	ENST00000488905	CLRN3	Q8NCR9	226 aa		11.81	□□□□□ -0.52
HDAC6-231	ENST00000488905	C11orf52	Q96A22	123 aa		11.81	□□□□□ -0.52
HDAC6-231	ENST00000488905	TPPP3	Q9BW30	176 aa		11.81	□□□□□ -0.52
HDAC6-231	ENST00000488905	KANTR	A0A1W2PQU2	76 aa		11.8	□□□□□ -0.52
HDAC6-231	ENST00000488905	CENPW	Q5EE01	88 aa		11.8	□□□□□ -0.52
HDAC6-231	ENST00000488905	SDIM1	Q6ZPB5	146 aa		11.8	□□□□□ -0.52
HDAC6-231	ENST00000488905	FER1L6-AS1	Q8NA97	138 aa		11.8	□□□□□ -0.52
HDAC6-231	ENST00000488905	C20orf203	Q8NBC4	194 aa		11.8	□□□□□ -0.52
HDAC6-231	ENST00000488905	MANBAL	Q9NQG1	85 aa		11.8	□□□□□ -0.52
HDAC6-231	ENST00000488905		A0A0D9SG52	128 aa		11.79	□□□□□ -0.52
HDAC6-231	ENST00000488905	HMSD	A8MTL9	139 aa		11.79	□□□□□ -0.52
HDAC6-231	ENST00000488905	TRAV8-4	A0A0B4J246	113 aa		11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905	hDV102S1	A0JD36	115 aa		11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905		P01737	135 aa		11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905	NKX2-5	P52952	324 aa	Predicted RBP	11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905	RPS20	P60866	119 aa	Known RBP	11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905	CACNG7	P62955	275 aa		11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905	CIRBP	Q14011	172 aa	Known RBP	11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905	OR2D3	Q8NGH3	330 aa		11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905	TMEM243	Q9BU79	118 aa		11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905	GNG13	Q9P2W3	67 aa		11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905	TNXB	P22105	4242 aa		11.78	□□□□□ -0.52
HDAC6-231	ENST00000488905	IGLV4-60	A0A075B6I1	120 aa		11.77	□□□□□ -0.53
HDAC6-231	ENST00000488905	EIF5A	P63241	154 aa	Known RBP	11.77	□□□□□ -0.53
HDAC6-231	ENST00000488905		A0A1B0GUV1	79 aa		11.76	□□□□□ -0.53
HDAC6-231	ENST00000488905	C19orf71	A6NCJ1	209 aa		11.76	□□□□□ -0.53
HDAC6-231	ENST00000488905	CCL20	P78556	96 aa		11.76	□□□□□ -0.53
HDAC6-231	ENST00000488905	RASL11A	Q6T310	242 aa		11.76	□□□□□ -0.53
HDAC6-231	ENST00000488905	PGLYRP4	Q96LB8	373 aa		11.76	□□□□□ -0.53
HDAC6-231	ENST00000488905	GFRA4	Q9GZZ7	299 aa		11.76	□□□□□ -0.53
HDAC6-231	ENST00000488905	SMIM12	Q96EX1	92 aa		11.75	□□□□□ -0.53
HDAC6-231	ENST00000488905	IGHV3-64	A0A075B6Q5	118 aa		11.74	□□□□□ -0.53
HDAC6-231	ENST00000488905	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	11.74	□□□□□ -0.53
HDAC6-231	ENST00000488905	XKRY2	A2RUG3	117 aa		11.74	□□□□□ -0.53
HDAC6-231	ENST00000488905	TRGC1	P0CF51	173 aa		11.74	□□□□□ -0.53
HDAC6-231	ENST00000488905	AP5S1	Q9NUS5	200 aa		11.74	□□□□□ -0.53
HDAC6-231	ENST00000488905	TRAV1-1	A0A0B4J248	108 aa		11.73	□□□□□ -0.53
HDAC6-231	ENST00000488905		F2Z2F3	143 aa		11.73	□□□□□ -0.53
HDAC6-231	ENST00000488905	UBE2L6	O14933	153 aa		11.73	□□□□□ -0.53
HDAC6-231	ENST00000488905	GNG4	P50150	75 aa		11.73	□□□□□ -0.53
HDAC6-231	ENST00000488905	DPH3P1	Q9H4G8	78 aa		11.73	□□□□□ -0.53
HDAC6-231	ENST00000488905	NIT2	Q9NQR4	276 aa		11.73	□□□□□ -0.53
HDAC6-231	ENST00000488905	RAB19	A4D1S5	217 aa		11.72	□□□□□ -0.53
HDAC6-231	ENST00000488905	SLPI	P03973	132 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms