RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TCEAL2Q9H3H9 227 aaPredicted RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 BANF2Q9H503 90 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 C11orf1Q9H5F2 150 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 RERGLQ9H628 205 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 PROK2Q9HC23 129 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 TMEM242Q9NWH2 141 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 TXNL4BQ9NX01 149 aaKnown RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 SPANXCQ9NY87 97 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 COMMD9Q9P000 198 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 HIGD1BQ9P298 99 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 LINC00474Q9P2X8 69 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 AK3Q9UIJ7 227 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 FIS1Q9Y3D6 152 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 SPCS1Q9Y6A9 102 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 HLA-DRB4X5D2U9 266 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 COL6A3P12111 3177 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 FREM1Q5H8C1 2179 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 ARFGEF3Q5TH69 2177 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 IGLV3-9A0A075B6K5 115 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 hCG_1818297A0A087WSY0 165 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 TRGV5A0A0B4J1U4 118 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 TRAV13-1A0A0B4J241 112 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 IGHV1-58A0A0C4DH39 117 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 A0A0D9SFI3 127 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 C3orf85A0A1B0GTC6 90 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 MDFIC2A0A1B0GVS7 189 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 hADV29S1A0JD25 119 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 C5orf49A4QMS7 147 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 MEIS3P1A6NDR6 274 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 NAP1L6A6NFF2 107 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 DPRXA6NFQ7 191 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 C11orf86A6NJI1 115 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 C2orf70A6NJV1 201 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 A8MT66 165 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 SNRPGP15A8MWD9 76 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 IBA57-AS1B1ANH7 110 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 H3BT86 120 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 J3QR89 54 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 K7ERJ3 54 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 M0R381 172 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 FXYD1O00168 92 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 OR1I1O60431 355 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 ARL6IP5O75915 188 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 NDUFC2O95298 119 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 ASAH2BP0C7U1 165 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 C3orf79P0CE67 100 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 CCL4P13236 92 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 PPIBP23284 216 aaKnown RBP0.62□□□□□ -2.31
SMC4-220ENST00000488017 PEBP1P30086 187 aaKnown RBP0.62□□□□□ -2.31
SMC4-220ENST00000488017 RNASE4P34096 147 aaKnown RBP0.62□□□□□ -2.31
SMC4-220ENST00000488017 CAV3P56539 151 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 TSPEAR-AS2P59090 65 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 TAS2R45P59539 299 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 SNRPD3P62318 126 aaKnown RBP0.62□□□□□ -2.31
SMC4-220ENST00000488017 SEC11AP67812 179 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 RPL18Q07020 188 aaKnown RBP0.62□□□□□ -2.31
SMC4-220ENST00000488017 C1DQ13901 141 aaKnown RBP0.62□□□□□ -2.31
SMC4-220ENST00000488017 INSL4Q14641 139 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 RTL8BQ17RB0 113 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 Q56UQ5 140 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 C1orf140Q5VVS0 124 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 MIC13Q5XKP0 118 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 NCBP2-AS2Q69YL0 99 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 Q6ZRN7 208 aaPredicted RBP0.62□□□□□ -2.31
SMC4-220ENST00000488017 SSX8Q7RTT4 187 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 COMMD6Q7Z4G1 85 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 C5orf38Q86SI9 138 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 GPHB5Q86YW7 130 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 Q8N8P6 123 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 OR10AC1Q8NH08 325 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 CLDND2Q8NHS1 167 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 MRPL30Q8TCC3 161 aaKnown RBP0.62□□□□□ -2.31
SMC4-220ENST00000488017 PPDPFLQ8WWR9 84 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 AQP3Q92482 292 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 Q9BRP9 147 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 GINS4Q9BRT9 223 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 TIMM21Q9BVV7 248 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 MANBALQ9NQG1 85 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 SLC39A9Q9NUM3 307 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 CCDC167Q9P0B6 97 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 LINC00527Q9UJ94 153 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 PXMP4Q9Y6I8 212 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 SERP1Q9Y6X1 66 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 GOLGA4Q13439 2230 aaKnown RBP0.62□□□□□ -2.31
SMC4-220ENST00000488017 ZFHX4Q86UP3 3567 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 NBPF19A0A087WUL8 3843 aa0.62□□□□□ -2.31
SMC4-220ENST00000488017 FXYD6-FXYD2A0A087WZ82 144 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 TRAV17A0A0B4J275 112 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 A0A1W2PQD3 144 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 FAM24AA6NFZ4 105 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 BBIP1A8MTZ0 92 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 A8MWV9 139 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 B4DSR2 109 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 E7EUB6 86 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 C17orf112F2Z3M2 114 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 H3BPC8 53 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 BUB1B-PAK6H3BSN5 160 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 H7BZZ5 65 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 TMEM256-PLSCR3K7ERE1 68 aa0.61□□□□□ -2.31
SMC4-220ENST00000488017 GNGT2O14610 69 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms