RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TRPT1Q86TN4 253 aaKnown RBP13.23□□□□□ -0.29
VIM-206ENST00000487938 MRPL16Q9NX20 251 aaKnown RBP13.23□□□□□ -0.29
VIM-206ENST00000487938 CENPEQ02224 2701 aa13.23□□□□□ -0.29
VIM-206ENST00000487938 A0A0J9YY99 117 aa13.23□□□□□ -0.29
VIM-206ENST00000487938 J3QLI3 93 aa13.23□□□□□ -0.29
VIM-206ENST00000487938 ELANEP08246 267 aa13.23□□□□□ -0.29
VIM-206ENST00000487938 UBE2E2Q96LR5 201 aa13.23□□□□□ -0.29
VIM-206ENST00000487938 ZFYVE26Q68DK2 2539 aa13.22□□□□□ -0.29
VIM-206ENST00000487938 Q6YL49 198 aa13.22□□□□□ -0.29
VIM-206ENST00000487938 ZNF462Q96JM2 2506 aa13.22□□□□□ -0.29
VIM-206ENST00000487938 APOMO95445 188 aa13.22□□□□□ -0.29
VIM-206ENST00000487938 PROK1P58294 105 aa13.21□□□□□ -0.29
VIM-206ENST00000487938 GAGE13Q4V321 117 aa13.21□□□□□ -0.29
VIM-206ENST00000487938 HIST2H2BDQ6DRA6 164 aa13.21□□□□□ -0.29
VIM-206ENST00000487938 ZNF843Q8N446 348 aa13.21□□□□□ -0.29
VIM-206ENST00000487938 TMEM238LA0A1B0GVL6 79 aa13.2□□□□□ -0.3
VIM-206ENST00000487938 A6NJY4 79 aa13.2□□□□□ -0.3
VIM-206ENST00000487938 DEFB131AP59861 70 aa13.2□□□□□ -0.3
VIM-206ENST00000487938 ETDBQ3ZM63 59 aa13.2□□□□□ -0.3
VIM-206ENST00000487938 DUX3Q96PT4 197 aa13.2□□□□□ -0.3
VIM-206ENST00000487938 SPANXB1Q9NS25 103 aaPredicted RBP13.2□□□□□ -0.3
VIM-206ENST00000487938 CREBBPQ92793 2442 aa13.2□□□□□ -0.3
VIM-206ENST00000487938 NSUN5P1Q3KNT7 163 aa13.2□□□□□ -0.3
VIM-206ENST00000487938 IGHV3-64A0A075B6Q5 118 aa13.19□□□□□ -0.3
VIM-206ENST00000487938 I3L3M4 83 aa13.19□□□□□ -0.3
VIM-206ENST00000487938 UBE2D1P51668 147 aa13.19□□□□□ -0.3
VIM-206ENST00000487938 RHOHQ15669 191 aa13.19□□□□□ -0.3
VIM-206ENST00000487938 TRGV11A0A075B6L2 103 aa13.19□□□□□ -0.3
VIM-206ENST00000487938 C20orf203Q8NBC4 194 aa13.19□□□□□ -0.3
VIM-206ENST00000487938 J3QQQ9 107 aa13.18□□□□□ -0.3
VIM-206ENST00000487938 IGHV4-31P0DP07 118 aa13.18□□□□□ -0.3
VIM-206ENST00000487938 FAM208BQ5VWN6 2430 aa13.18□□□□□ -0.3
VIM-206ENST00000487938 LOC107984156A0A0G2JMH3 177 aa13.18□□□□□ -0.3
VIM-206ENST00000487938 TSPAN13O95857 204 aa13.18□□□□□ -0.3
VIM-206ENST00000487938 ARL17AQ8IVW1 177 aa13.18□□□□□ -0.3
VIM-206ENST00000487938 PRO0461Q9UI25 63 aa13.18□□□□□ -0.3
VIM-206ENST00000487938 LGALS3P17931 250 aaKnown RBP13.17□□□□□ -0.3
VIM-206ENST00000487938 KRTAP10-9P60411 292 aa13.17□□□□□ -0.3
VIM-206ENST00000487938 AMELXQ99217 191 aa13.17□□□□□ -0.3
VIM-206ENST00000487938 FSHBP01225 129 aa13.16□□□□□ -0.3
VIM-206ENST00000487938 NFE4Q86UQ8 179 aa13.16□□□□□ -0.3
VIM-206ENST00000487938 SLC25A29Q8N8R3 303 aa13.16□□□□□ -0.3
VIM-206ENST00000487938 A0A0J9YXV3 536 aa13.16□□□□□ -0.3
VIM-206ENST00000487938 IGHV3-30P01768 117 aa13.16□□□□□ -0.3
VIM-206ENST00000487938 IGHV3-30-5P0DP03 117 aa13.16□□□□□ -0.3
VIM-206ENST00000487938 PSMB2P49721 201 aa13.16□□□□□ -0.3
VIM-206ENST00000487938 Q9UF83 564 aa13.16□□□□□ -0.3
VIM-206ENST00000487938 RBMY1BA6NDE4 496 aaKnown RBP13.15□□□□□ -0.3
VIM-206ENST00000487938 RBMY1EA6NEQ0 496 aaKnown RBP13.15□□□□□ -0.3
VIM-206ENST00000487938 RBMY1DP0C7P1 496 aaKnown RBP13.15□□□□□ -0.3
VIM-206ENST00000487938 NDUFA11Q86Y39 141 aa13.15□□□□□ -0.3
VIM-206ENST00000487938 VCX2Q9H322 139 aa13.15□□□□□ -0.3
VIM-206ENST00000487938 IGLV4-3A0A075B6K6 122 aa13.15□□□□□ -0.3
VIM-206ENST00000487938 TMEM223A0PJW6 202 aa13.15□□□□□ -0.3
VIM-206ENST00000487938 RNF152Q8N8N0 203 aa13.15□□□□□ -0.3
VIM-206ENST00000487938 LRRK2Q5S007 2527 aa13.15□□□□□ -0.31
VIM-206ENST00000487938 TEX15Q9BXT5 2789 aa13.14□□□□□ -0.31
VIM-206ENST00000487938 H3BMM0 161 aa13.14□□□□□ -0.31
VIM-206ENST00000487938 CFC1BP0CG36 223 aa13.14□□□□□ -0.31
VIM-206ENST00000487938 CFC1P0CG37 223 aa13.14□□□□□ -0.31
VIM-206ENST00000487938 CEMP1Q6PRD7 247 aaPredicted RBP13.14□□□□□ -0.31
VIM-206ENST00000487938 SPAG8Q99932 426 aaPredicted RBP13.14□□□□□ -0.31
VIM-206ENST00000487938 KHDC1LQ5JSQ8 128 aa13.14□□□□□ -0.31
VIM-206ENST00000487938 ZNF22P17026 224 aaPredicted RBP13.13□□□□□ -0.31
VIM-206ENST00000487938 INSL3P51460 131 aa13.13□□□□□ -0.31
VIM-206ENST00000487938 TMEM61Q8N0U2 210 aa13.13□□□□□ -0.31
VIM-206ENST00000487938 TSSC4Q9Y5U2 329 aaPredicted RBP13.13□□□□□ -0.31
VIM-206ENST00000487938 RHODO00212 210 aa13.13□□□□□ -0.31
VIM-206ENST00000487938 LEPROTO15243 131 aa13.13□□□□□ -0.31
VIM-206ENST00000487938 CR1P17927 2039 aa13.12□□□□□ -0.31
VIM-206ENST00000487938 RNASE13Q5GAN3 156 aaKnown RBP13.12□□□□□ -0.31
VIM-206ENST00000487938 Q6ZSN1 163 aa13.12□□□□□ -0.31
VIM-206ENST00000487938 DLX4Q92988 240 aaPredicted RBP13.12□□□□□ -0.31
VIM-206ENST00000487938 UBR5O95071 2799 aaPredicted RBP13.12□□□□□ -0.31
VIM-206ENST00000487938 CD28P10747 220 aa13.11□□□□□ -0.31
VIM-206ENST00000487938 SPXQ9BT56 116 aa13.11□□□□□ -0.31
VIM-206ENST00000487938 TNFRSF18Q9Y5U5 241 aa13.11□□□□□ -0.31
VIM-206ENST00000487938 SMCPP49901 116 aaPredicted RBP13.1□□□□□ -0.31
VIM-206ENST00000487938 FAM104AQ969W3 186 aa13.1□□□□□ -0.31
VIM-206ENST00000487938 UBE2D3P61077 147 aa13.1□□□□□ -0.31
VIM-206ENST00000487938 UBE2D2P62837 147 aa13.1□□□□□ -0.31
VIM-206ENST00000487938 DEFB113Q30KQ7 82 aa13.1□□□□□ -0.31
VIM-206ENST00000487938 ZNF418Q8TF45 676 aaPredicted RBP13.1□□□□□ -0.31
VIM-206ENST00000487938 GTSF1LQ9H1H1 148 aa13.1□□□□□ -0.31
VIM-206ENST00000487938 M0R2P5 195 aa13.09□□□□□ -0.31
VIM-206ENST00000487938 CFAP126Q5VTH2 177 aa13.09□□□□□ -0.31
VIM-206ENST00000487938 PTPN13Q12923 2485 aa13.09□□□□□ -0.31
VIM-206ENST00000487938 TRAV2A0A0B4J234 112 aa13.09□□□□□ -0.31
VIM-206ENST00000487938 J3QR89 54 aa13.09□□□□□ -0.31
VIM-206ENST00000487938 Q5PR19 223 aa13.09□□□□□ -0.31
VIM-206ENST00000487938 LINC01587Q99440 93 aa13.09□□□□□ -0.31
VIM-206ENST00000487938 GAGE12HA6NDE8 117 aa13.08□□□□□ -0.32
VIM-206ENST00000487938 ADARB2-AS1A8MUL3 147 aa13.08□□□□□ -0.32
VIM-206ENST00000487938 PEMTQ9UBM1 199 aa13.08□□□□□ -0.32
VIM-206ENST00000487938 ZNF469Q96JG9 3925 aaPredicted RBP13.08□□□□□ -0.32
VIM-206ENST00000487938 A4D1N5 150 aa13.08□□□□□ -0.32
VIM-206ENST00000487938 TCL1BO95988 128 aa13.08□□□□□ -0.32
VIM-206ENST00000487938 MAP6D1Q9H9H5 199 aa13.08□□□□□ -0.32
VIM-206ENST00000487938 PRO1854Q9UHT4 67 aa13.08□□□□□ -0.32
VIM-206ENST00000487938 ABCA12Q86UK0 2595 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms