RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PFN4Q8NHR9 129 aa1.62□□□□□ -2.15
VPS41-213ENST00000485955 DIRC1Q969H9 104 aa1.62□□□□□ -2.15
VPS41-213ENST00000485955 UBE2WQ96B02 151 aa1.62□□□□□ -2.15
VPS41-213ENST00000485955 GINS4Q9BRT9 223 aa1.62□□□□□ -2.15
VPS41-213ENST00000485955 NAA60Q9H7X0 242 aa1.62□□□□□ -2.15
VPS41-213ENST00000485955 LSM2Q9Y333 95 aaKnown RBP1.62□□□□□ -2.15
VPS41-213ENST00000485955 NOP16Q9Y3C1 178 aaKnown RBP1.62□□□□□ -2.15
VPS41-213ENST00000485955 CHCHD2Q9Y6H1 151 aaPredicted RBP1.62□□□□□ -2.15
VPS41-213ENST00000485955 ICOSQ9Y6W8 199 aa1.62□□□□□ -2.15
VPS41-213ENST00000485955 OBSL1O75147 1896 aa1.62□□□□□ -2.15
VPS41-213ENST00000485955 PDCD11Q14690 1871 aaKnown RBP1.62□□□□□ -2.15
VPS41-213ENST00000485955 PLXND1Q9Y4D7 1925 aa1.62□□□□□ -2.15
VPS41-213ENST00000485955 TENM3Q9P273 2699 aa1.62□□□□□ -2.15
VPS41-213ENST00000485955 FRAS1Q86XX4 4008 aa1.62□□□□□ -2.15
VPS41-213ENST00000485955 PKDREJQ9NTG1 2253 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 TRBV20-1A0A075B6N2 111 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 IGKV1OR2-108A0A075B7D4 117 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 C19orf71A6NCJ1 209 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 C17orf51A8MQB3 221 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 C5orf67F2Z3F1 127 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 SDCBPO00560 298 aaPredicted RBP1.61□□□□□ -2.15
VPS41-213ENST00000485955 SYNGR2O43760 224 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 CTSDP07339 412 aaPredicted RBP1.61□□□□□ -2.15
VPS41-213ENST00000485955 MSMBP08118 114 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 P0C880 135 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 GZMBP10144 247 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 IFITM1P13164 125 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 LSM3P62310 102 aaKnown RBP1.61□□□□□ -2.15
VPS41-213ENST00000485955 UBA52P62987 128 aaKnown RBP1.61□□□□□ -2.15
VPS41-213ENST00000485955 ZNF90Q03938 601 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 MIAQ16674 131 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 KHDC3LQ587J8 217 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 LINC01545Q5VT33 79 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 NOXRED1Q6NXP6 359 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 ZNF322Q6U7Q0 402 aaPredicted RBP1.61□□□□□ -2.15
VPS41-213ENST00000485955 C2orf91Q6ZV80 131 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 SVBPQ8N300 66 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 C10orf111Q8N326 155 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 LINC00471Q8N535 108 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 DEFB124Q8NES8 71 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 SMCR5Q8TEV8 140 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 LCN9Q8WX39 176 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 PKMYT1Q99640 499 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 SLC35B3Q9H1N7 401 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 LINC00574Q9H8X3 128 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 OR5V1Q9UGF6 321 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 DNAJC15Q9Y5T4 150 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 SERP1Q9Y6X1 66 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 HSPE1-MOB4S4R3N1 261 aa1.61□□□□□ -2.15
VPS41-213ENST00000485955 SONP18583 2426 aaKnown RBP1.6□□□□□ -2.15
VPS41-213ENST00000485955 THADAQ6YHU6 1953 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 IGKV1D-37A0A075B6S9 117 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.6□□□□□ -2.15
VPS41-213ENST00000485955 A0A0B4J2C4 111 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 C3orf85A0A1B0GTC6 90 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 TCRBV3S1A0A5B6 114 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 OR51F1A6NGY5 319 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 H3BT86 120 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 OR1I1O60431 355 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 YPEL1O60688 119 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 TCL1BO95988 128 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 LHBP01229 141 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 RBP4P02753 201 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 CD3DP04234 171 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 TPT1P13693 172 aaKnown RBP1.6□□□□□ -2.15
VPS41-213ENST00000485955 FABP4P15090 132 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 XCL1P47992 114 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 FOXA1P55317 472 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 DYNLT1P63172 113 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 Q56UQ5 140 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 Q6AWC8 147 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 ZNF660Q6AZW8 331 aaPredicted RBP1.6□□□□□ -2.15
VPS41-213ENST00000485955 SLC35E3Q7Z769 313 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 DYNAPQ8N1N2 210 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 RPRMLQ8N4K4 120 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 FAM216BQ8N7L0 139 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 C3orf56Q8N813 242 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 OTOSQ8NHW6 89 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 RAB37Q96AX2 223 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 MRPS24Q96EL2 167 aaKnown RBP1.6□□□□□ -2.15
VPS41-213ENST00000485955 LINC00526Q96FQ7 95 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 SEC11CQ9BY50 192 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 AGPAT4-IT1Q9H0P7 198 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 PRO1933Q9H354 126 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 SMDT1Q9H4I9 107 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 SAR1AQ9NR31 198 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 FKBP11Q9NYL4 201 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 RPL26L1Q9UNX3 145 aaKnown RBP1.6□□□□□ -2.15
VPS41-213ENST00000485955 U3KQK5 164 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 KNL1Q8NG31 2342 aa1.6□□□□□ -2.15
VPS41-213ENST00000485955 MYO5AQ9Y4I1 1855 aaKnown RBP1.59□□□□□ -2.15
VPS41-213ENST00000485955 IGLV3-9A0A075B6K5 115 aa1.59□□□□□ -2.15
VPS41-213ENST00000485955 TRGV5A0A0B4J1U4 118 aa1.59□□□□□ -2.15
VPS41-213ENST00000485955 IGHV3-73A0A0B4J1V6 119 aa1.59□□□□□ -2.15
VPS41-213ENST00000485955 A0A0D9SG52 128 aa1.59□□□□□ -2.15
VPS41-213ENST00000485955 MDFIC2A0A1B0GVS7 189 aa1.59□□□□□ -2.15
VPS41-213ENST00000485955 LOC107986453A0A1B0GWG9 222 aa1.59□□□□□ -2.15
VPS41-213ENST00000485955 C16orf90A8MZG2 172 aa1.59□□□□□ -2.15
VPS41-213ENST00000485955 MCRIP1C9JLW8 97 aa1.59□□□□□ -2.15
VPS41-213ENST00000485955 APOC4-APOC2K7ER74 178 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms