RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 GAGE1Q13065 139 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 GAGE4Q13068 117 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 GAGE5Q13069 117 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 ZNF726P1Q15940 193 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 MIAQ16674 131 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 FAM74A4Q5TZK3 123 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 NIT1Q86X76 327 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 ZC2HC1AQ96GY0 325 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 SFRP2Q96HF1 295 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 SGK494Q96LW2 274 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 C1orf43Q9BWL3 253 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 ZNF471Q9BX82 626 aaPredicted RBP2.75□□□□□ -1.97
VPS13D-208ENST00000481484 MANBALQ9NQG1 85 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 BIN3Q9NQY0 253 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 TNFRSF18Q9Y5U5 241 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 PKHD1L1Q86WI1 4243 aa2.75□□□□□ -1.97
VPS13D-208ENST00000481484 IGKV2D-24A0A075B6R9 120 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 IGHV3-73A0A0B4J1V6 119 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 TRAV34A0A0B4J273 112 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 A0A0D9SG52 128 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 KANTRA0A1W2PQU2 76 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 XKRY2A2RUG3 117 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 M0R036 132 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 M0R381 172 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 ARPC5O15511 151 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 BCL2L11O43521 198 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 SNAI2O43623 268 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 EIF3GO75821 320 aaKnown RBP eCLIP2.74□□□□□ -1.97
VPS13D-208ENST00000481484 IGLV2-8P01709 118 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 ARMS2P0C7Q2 107 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 SMIM17P0DL12 118 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 TAGLN2P37802 199 aaKnown RBP2.74□□□□□ -1.97
VPS13D-208ENST00000481484 RAB5CP51148 216 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 RPS20P60866 119 aaKnown RBP2.74□□□□□ -1.97
VPS13D-208ENST00000481484 UBE2D3P61077 147 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 UBE2D2P62837 147 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 ZNF56Q15929 161 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 CST9LP1Q5W188 147 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 EIF5AL1Q6IS14 154 aaKnown RBP2.74□□□□□ -1.97
VPS13D-208ENST00000481484 Q6ZNX1 250 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 DAZ4Q86SG3 579 aaKnown RBP2.74□□□□□ -1.97
VPS13D-208ENST00000481484 KCNRGQ8N5I3 272 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 DEFB104AQ8WTQ1 72 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 C11orf52Q96A22 123 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 KRTAP9-8Q9BYQ0 159 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 DAZ3Q9NR90 486 aaKnown RBP2.74□□□□□ -1.97
VPS13D-208ENST00000481484 VAX2Q9UIW0 290 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 PKIGQ9Y2B9 76 aa2.74□□□□□ -1.97
VPS13D-208ENST00000481484 TRBV25-1A0A075B6N4 114 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 A0A087WWL8 130 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 TRBV6-8A0A0A6YYG3 113 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 HMSDA8MTL9 139 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 G3V3Q6 166 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 IFNA1P01562 189 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 CACNG7P62955 275 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 SPANXN1Q5VSR9 72 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 PRR27Q6MZM9 219 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 C14orf178Q8N769 122 aaPredicted RBP2.73□□□□□ -1.97
VPS13D-208ENST00000481484 FAM213BQ8TBF2 198 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 MBD3L1Q8WWY6 194 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 UBE2WQ96B02 151 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 PGLYRP4Q96LB8 373 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 DNAJC30Q96LL9 226 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 CHAC1Q9BUX1 264 aa2.73□□□□□ -1.97
VPS13D-208ENST00000481484 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.72□□□□□ -1.97
VPS13D-208ENST00000481484 TRAV8-4A0A0B4J246 113 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 TRAV1-1A0A0B4J248 108 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 IGHV1-24A0A0C4DH33 117 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 GRIFINA4D1Z8 144 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 KRTAP29-1A8MX34 341 aaPredicted RBP2.72□□□□□ -1.97
VPS13D-208ENST00000481484 F2Z2F3 143 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 PDE6DO43924 150 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 PAGE4O60829 102 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 P01737 135 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 ANGP03950 147 aaKnown RBP2.72□□□□□ -1.97
VPS13D-208ENST00000481484 TRGC1P0CF51 173 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 GZMBP10144 247 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 RPL19P84098 196 aaKnown RBP2.72□□□□□ -1.97
VPS13D-208ENST00000481484 WFDC2Q14508 124 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 IQCJQ1A5X6 159 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 DGAT2L7PQ6IED9 249 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 WDR73Q6P4I2 378 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 SCXQ7RTU7 201 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 BAGE2Q86Y30 109 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 NEXN-AS1Q8NBZ9 246 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 OR10AG1Q8NH19 301 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 SFT2D1Q8WV19 159 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 FAM210AQ96ND0 272 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 CHCHD5Q9BSY4 110 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 SAMD10Q9BYL1 202 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 CYTL1Q9NRR1 136 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 PRR34Q9NV39 138 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 KLK12Q9UKR0 248 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 FAT3Q8TDW7 4589 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 HMCN2Q8NDA2 5059 aa2.72□□□□□ -1.97
VPS13D-208ENST00000481484 TMSB15BA0A087X1C1 80 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.71□□□□□ -1.98
VPS13D-208ENST00000481484 F5H697 171 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 OXTP01178 125 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 HLA-DQA1P01909 254 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms