RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 ZNF818PQ6ZRF7 136 aa0.49□□□□□ -2.33
VPS50-212ENST00000476413 VMO1Q7Z5L0 202 aa0.49□□□□□ -2.33
VPS50-212ENST00000476413 SMIM11BQ8TCY0 68 aa0.49□□□□□ -2.33
VPS50-212ENST00000476413 LINC00470Q9BZP3 86 aa0.49□□□□□ -2.33
VPS50-212ENST00000476413 SSC5DA1L4H1 1573 aa0.49□□□□□ -2.33
VPS50-212ENST00000476413 MUC5BQ9HC84 5762 aaPredicted RBP0.48□□□□□ -2.33
VPS50-212ENST00000476413 TRBV10-3A0A0K0K1G6 114 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 APOC2P02655 101 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 ACYP2P14621 99 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 HIST1H1DP16402 221 aaKnown RBP0.48□□□□□ -2.33
VPS50-212ENST00000476413 GCHFRP30047 84 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 S100A3P33764 101 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 EDDM3BP56851 147 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 Q56UQ5 140 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 MEIG1Q5JSS6 88 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 S100A7L2Q5SY68 101 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 RPL13AP3Q6NVV1 102 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 SPINK6Q6UWN8 80 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 C10orf82Q8WW14 230 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 DPH3Q96FX2 82 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 PPP3R2Q96LZ3 170 aa0.48□□□□□ -2.33
VPS50-212ENST00000476413 CDK13Q14004 1512 aaKnown RBP0.48□□□□□ -2.33
VPS50-212ENST00000476413 NAV2Q8IVL1 2488 aa0.47□□□□□ -2.33
VPS50-212ENST00000476413 IBTKQ9P2D0 1353 aaPredicted RBP0.47□□□□□ -2.33
VPS50-212ENST00000476413 NDUFA2O43678 99 aa0.47□□□□□ -2.33
VPS50-212ENST00000476413 GNG7O60262 68 aa0.47□□□□□ -2.33
VPS50-212ENST00000476413 AKAIN1P0CW23 69 aa0.47□□□□□ -2.33
VPS50-212ENST00000476413 FGF7P21781 194 aa0.47□□□□□ -2.33
VPS50-212ENST00000476413 CCL8P80075 99 aa0.47□□□□□ -2.33
VPS50-212ENST00000476413 COX6A2Q02221 97 aa0.47□□□□□ -2.33
VPS50-212ENST00000476413 SNRNP25Q9BV90 132 aaKnown RBP0.47□□□□□ -2.33
VPS50-212ENST00000476413 AGPAT4-IT1Q9H0P7 198 aa0.47□□□□□ -2.33
VPS50-212ENST00000476413 R4GMQ9 66 aa0.47□□□□□ -2.33
VPS50-212ENST00000476413 BICRAQ9NZM4 1560 aa0.47□□□□□ -2.33
VPS50-212ENST00000476413 SYNE1Q8NF91 8797 aaKnown RBP0.46□□□□□ -2.34
VPS50-212ENST00000476413 TMEM14DPA8MWL7 114 aa0.46□□□□□ -2.34
VPS50-212ENST00000476413 K7EP13 123 aa0.46□□□□□ -2.34
VPS50-212ENST00000476413 MRPS10P82664 201 aaKnown RBP0.46□□□□□ -2.34
VPS50-212ENST00000476413 BAGE3Q86Y29 109 aa0.46□□□□□ -2.34
VPS50-212ENST00000476413 C8orf59Q8N0T1 100 aaPredicted RBP0.46□□□□□ -2.34
VPS50-212ENST00000476413 SERP1Q9Y6X1 66 aa0.46□□□□□ -2.34
VPS50-212ENST00000476413 TRAV13-2A0A0B4J235 113 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 PIN1P1O15428 100 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 SNAPC5O75971 98 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 SIX6O95475 246 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 INSL4Q14641 139 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 C10orf128Q5T292 105 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.45□□□□□ -2.34
VPS50-212ENST00000476413 FAM213BQ8TBF2 198 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 SMIM4Q8WVI0 70 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 NPVFQ9HCQ7 196 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 LINC00312Q9Y6C7 94 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 ZNF518AQ6AHZ1 1483 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 FAT4Q6V0I7 4981 aa0.45□□□□□ -2.34
VPS50-212ENST00000476413 TRGV1A0A0A0MS02 117 aa0.44□□□□□ -2.34
VPS50-212ENST00000476413 A0A0D9SFI3 127 aa0.44□□□□□ -2.34
VPS50-212ENST00000476413 CLPSL1A2RUU4 121 aa0.44□□□□□ -2.34
VPS50-212ENST00000476413 PPP1R17O96001 155 aa0.44□□□□□ -2.34
VPS50-212ENST00000476413 UBE2D1P51668 147 aa0.44□□□□□ -2.34
VPS50-212ENST00000476413 BTG2P78543 158 aa0.44□□□□□ -2.34
VPS50-212ENST00000476413 RBM3P98179 157 aaKnown RBP0.44□□□□□ -2.34
VPS50-212ENST00000476413 Q6ZRX8 168 aa0.44□□□□□ -2.34
VPS50-212ENST00000476413 UBE2DNLQ8IWF7 75 aa0.44□□□□□ -2.34
VPS50-212ENST00000476413 TTC9CQ8N5M4 171 aa0.44□□□□□ -2.34
VPS50-212ENST00000476413 MYOZ3Q8TDC0 251 aa0.44□□□□□ -2.34
VPS50-212ENST00000476413 KTN1Q86UP2 1357 aaKnown RBP0.44□□□□□ -2.34
VPS50-212ENST00000476413 CACNA1HO95180 2353 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 GRIN2AQ12879 1464 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 IFT140Q96RY7 1462 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 FAM24AA6NFZ4 105 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 MIF4GDA9UHW6 222 aaKnown RBP0.43□□□□□ -2.34
VPS50-212ENST00000476413 HCG22E2RYF7 251 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 SSSCA1O60232 199 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 CATR1Q13166 79 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 Q6AWC8 147 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 SVBPQ8N300 66 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 TMEM203Q969S6 136 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 WFDC6Q9BQY6 131 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 CYP4F30PQ9H0H9 118 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 MDN1Q9NU22 5596 aa0.43□□□□□ -2.34
VPS50-212ENST00000476413 TRAV1-2A0A0B4J238 106 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 CTXND1A0A1B0GTU2 59 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 LOC285095A0A1B0GVY8 99 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 APOC3P02656 99 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 NMBP08949 121 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 TPPP2P59282 170 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 SPAG11BQ08648 103 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 WHAMMP3Q1A5X7 153 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 MRPL54Q6P161 138 aaKnown RBP0.42□□□□□ -2.34
VPS50-212ENST00000476413 SPAG11AQ6PDA7 123 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 PP6455Q8WZ26 134 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 GNG8Q9UK08 70 aa0.42□□□□□ -2.34
VPS50-212ENST00000476413 CFTRP13569 1480 aa0.41□□□□□ -2.34
VPS50-212ENST00000476413 LAMC3Q9Y6N6 1575 aa0.41□□□□□ -2.34
VPS50-212ENST00000476413 TTC28Q96AY4 2481 aa0.41□□□□□ -2.34
VPS50-212ENST00000476413 SPINK1P00995 79 aa0.41□□□□□ -2.34
VPS50-212ENST00000476413 SPINK8P0C7L1 97 aa0.41□□□□□ -2.34
VPS50-212ENST00000476413 COX17Q14061 63 aa0.41□□□□□ -2.34
VPS50-212ENST00000476413 TMEM170BQ5T4T1 132 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms