RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 DNAJC30Q96LL9 226 aa11.93□□□□□ -0.5
UPF3A-203ENST00000474056 URGCP-MRPS24S4R325 110 aa11.93□□□□□ -0.5
UPF3A-203ENST00000474056 DNAH8Q96JB1 4490 aa11.92□□□□□ -0.5
UPF3A-203ENST00000474056 XKRY2A2RUG3 117 aa11.92□□□□□ -0.5
UPF3A-203ENST00000474056 MGPP08493 103 aa11.92□□□□□ -0.5
UPF3A-203ENST00000474056 CACNG7P62955 275 aa11.92□□□□□ -0.5
UPF3A-203ENST00000474056 WFDC2Q14508 124 aa11.92□□□□□ -0.5
UPF3A-203ENST00000474056 TOR2AQ5JU69 321 aa11.92□□□□□ -0.5
UPF3A-203ENST00000474056 LYZL1Q6UWQ5 148 aa11.92□□□□□ -0.5
UPF3A-203ENST00000474056 Q8N814 137 aa11.92□□□□□ -0.5
UPF3A-203ENST00000474056 TM2D2Q9BX73 214 aa11.92□□□□□ -0.5
UPF3A-203ENST00000474056 TRBV6-8A0A0A6YYG3 113 aa11.91□□□□□ -0.5
UPF3A-203ENST00000474056 Q8N1X5 172 aa11.91□□□□□ -0.5
UPF3A-203ENST00000474056 OCC1Q8TAD7 63 aa11.91□□□□□ -0.5
UPF3A-203ENST00000474056 CHCHD7Q9BUK0 85 aa11.91□□□□□ -0.5
UPF3A-203ENST00000474056 RNASE7Q9H1E1 156 aaKnown RBP11.91□□□□□ -0.5
UPF3A-203ENST00000474056 KLK12Q9UKR0 248 aa11.91□□□□□ -0.5
UPF3A-203ENST00000474056 A0A087WX48 190 aa11.9□□□□□ -0.5
UPF3A-203ENST00000474056 IGLV5-52A0A0A0MRZ9 124 aa11.9□□□□□ -0.5
UPF3A-203ENST00000474056 FAT1Q14517 4588 aa11.89□□□□□ -0.51
UPF3A-203ENST00000474056 F2Z2F3 143 aa11.89□□□□□ -0.51
UPF3A-203ENST00000474056 TMEM250H0YL14 139 aa11.89□□□□□ -0.51
UPF3A-203ENST00000474056 GCSHP23434 173 aa11.89□□□□□ -0.51
UPF3A-203ENST00000474056 XGP55808 180 aa11.89□□□□□ -0.51
UPF3A-203ENST00000474056 SUMO4Q6EEV6 95 aa11.89□□□□□ -0.51
UPF3A-203ENST00000474056 KCNIP4Q6PIL6 250 aa11.89□□□□□ -0.51
UPF3A-203ENST00000474056 NTN5Q8WTR8 489 aaPredicted RBP11.89□□□□□ -0.51
UPF3A-203ENST00000474056 RPP21Q9H633 154 aaKnown RBP11.89□□□□□ -0.51
UPF3A-203ENST00000474056 M0QY20 66 aa11.88□□□□□ -0.51
UPF3A-203ENST00000474056 LECT2O14960 151 aa11.88□□□□□ -0.51
UPF3A-203ENST00000474056 TRGC1P0CF51 173 aa11.88□□□□□ -0.51
UPF3A-203ENST00000474056 NTF3P20783 257 aa11.88□□□□□ -0.51
UPF3A-203ENST00000474056 CTRLP40313 264 aa11.88□□□□□ -0.51
UPF3A-203ENST00000474056 MPV17L2Q567V2 206 aa11.88□□□□□ -0.51
UPF3A-203ENST00000474056 NTM-AS1Q6ZSK4 140 aa11.88□□□□□ -0.51
UPF3A-203ENST00000474056 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.88□□□□□ -0.51
UPF3A-203ENST00000474056 UBE2WQ96B02 151 aa11.88□□□□□ -0.51
UPF3A-203ENST00000474056 TMEM262E9PQX1 116 aa11.87□□□□□ -0.51
UPF3A-203ENST00000474056 IGKV2D-24A0A075B6R9 120 aa11.86□□□□□ -0.51
UPF3A-203ENST00000474056 CEBPGP53567 150 aa11.86□□□□□ -0.51
UPF3A-203ENST00000474056 ELOBQ15370 118 aa11.86□□□□□ -0.51
UPF3A-203ENST00000474056 RMI2Q96E14 147 aa11.86□□□□□ -0.51
UPF3A-203ENST00000474056 DPH3P1Q9H4G8 78 aa11.86□□□□□ -0.51
UPF3A-203ENST00000474056 COX11Q9Y6N1 276 aa11.86□□□□□ -0.51
UPF3A-203ENST00000474056 H7C1H1 209 aa11.85□□□□□ -0.51
UPF3A-203ENST00000474056 TMEM97Q5BJF2 176 aa11.85□□□□□ -0.51
UPF3A-203ENST00000474056 BAALCQ8WXS3 180 aa11.85□□□□□ -0.51
UPF3A-203ENST00000474056 CHCHD5Q9BSY4 110 aa11.85□□□□□ -0.51
UPF3A-203ENST00000474056 CNFNQ9BYD5 112 aa11.85□□□□□ -0.51
UPF3A-203ENST00000474056 WDR73Q6P4I2 378 aa11.84□□□□□ -0.51
UPF3A-203ENST00000474056 C15orf54Q8N8G6 183 aa11.84□□□□□ -0.51
UPF3A-203ENST00000474056 FAM210AQ96ND0 272 aa11.84□□□□□ -0.51
UPF3A-203ENST00000474056 EIF5A2Q9GZV4 153 aaKnown RBP11.84□□□□□ -0.51
UPF3A-203ENST00000474056 GATCO43716 136 aaKnown RBP11.83□□□□□ -0.52
UPF3A-203ENST00000474056 Q0VG73 95 aa11.83□□□□□ -0.52
UPF3A-203ENST00000474056 TWIST1Q15672 202 aa11.83□□□□□ -0.52
UPF3A-203ENST00000474056 RASL11AQ6T310 242 aa11.83□□□□□ -0.52
UPF3A-203ENST00000474056 ATRAIDQ6UW56 229 aa11.83□□□□□ -0.52
UPF3A-203ENST00000474056 ENHOQ6UWT2 76 aa11.83□□□□□ -0.52
UPF3A-203ENST00000474056 FAM231DQ6ZW35 169 aa11.83□□□□□ -0.52
UPF3A-203ENST00000474056 Q8N976 141 aa11.83□□□□□ -0.52
UPF3A-203ENST00000474056 GTSF1Q8WW33 167 aa11.83□□□□□ -0.52
UPF3A-203ENST00000474056 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.82□□□□□ -0.52
UPF3A-203ENST00000474056 TRBV25-1A0A075B6N4 114 aa11.82□□□□□ -0.52
UPF3A-203ENST00000474056 ANGP03950 147 aaKnown RBP11.82□□□□□ -0.52
UPF3A-203ENST00000474056 HAMPP81172 84 aa11.82□□□□□ -0.52
UPF3A-203ENST00000474056 GAGE6Q13070 117 aa11.82□□□□□ -0.52
UPF3A-203ENST00000474056 NDUFS6O75380 124 aaKnown RBP11.81□□□□□ -0.52
UPF3A-203ENST00000474056 CRPP02741 224 aa11.81□□□□□ -0.52
UPF3A-203ENST00000474056 PKIAP61925 76 aa11.81□□□□□ -0.52
UPF3A-203ENST00000474056 IQCJQ1A5X6 159 aa11.81□□□□□ -0.52
UPF3A-203ENST00000474056 SMIM7Q9BQ49 75 aa11.81□□□□□ -0.52
UPF3A-203ENST00000474056 NIT2Q9NQR4 276 aa11.81□□□□□ -0.52
UPF3A-203ENST00000474056 IGHV1-24A0A0C4DH33 117 aa11.8□□□□□ -0.52
UPF3A-203ENST00000474056 SRP19P09132 144 aaKnown RBP11.8□□□□□ -0.52
UPF3A-203ENST00000474056 C1orf43Q9BWL3 253 aa11.8□□□□□ -0.52
UPF3A-203ENST00000474056 TRAV26-2A0A0B4J265 109 aa11.79□□□□□ -0.52
UPF3A-203ENST00000474056 RBX1P62877 108 aa11.79□□□□□ -0.52
UPF3A-203ENST00000474056 LINC01551Q86U37 167 aa11.79□□□□□ -0.52
UPF3A-203ENST00000474056 DEFB104AQ8WTQ1 72 aa11.79□□□□□ -0.52
UPF3A-203ENST00000474056 TMEM70Q9BUB7 260 aa11.79□□□□□ -0.52
UPF3A-203ENST00000474056 FAM30AQ9NZY2 134 aa11.79□□□□□ -0.52
UPF3A-203ENST00000474056 A8MWL6 223 aa11.78□□□□□ -0.52
UPF3A-203ENST00000474056 EPM2AB3EWF7 344 aa11.78□□□□□ -0.52
UPF3A-203ENST00000474056 FOXA3P55318 350 aaPredicted RBP11.78□□□□□ -0.52
UPF3A-203ENST00000474056 CT83Q5H943 113 aa11.78□□□□□ -0.52
UPF3A-203ENST00000474056 CLPSL2Q6UWE3 100 aa11.78□□□□□ -0.52
UPF3A-203ENST00000474056 GATD1Q8NB37 220 aa11.78□□□□□ -0.52
UPF3A-203ENST00000474056 PGLYRP4Q96LB8 373 aa11.78□□□□□ -0.52
UPF3A-203ENST00000474056 ZNF727A8MUV8 499 aa11.77□□□□□ -0.53
UPF3A-203ENST00000474056 PRR34Q9NV39 138 aa11.77□□□□□ -0.53
UPF3A-203ENST00000474056 SMR3BP02814 79 aaPredicted RBP11.76□□□□□ -0.53
UPF3A-203ENST00000474056 MIAQ16674 131 aa11.76□□□□□ -0.53
UPF3A-203ENST00000474056 TMEM243Q9BU79 118 aa11.76□□□□□ -0.53
UPF3A-203ENST00000474056 VPS13BQ7Z7G8 4022 aa11.75□□□□□ -0.53
UPF3A-203ENST00000474056 LINC01620Q4KN68 170 aa11.75□□□□□ -0.53
UPF3A-203ENST00000474056 Q5VSD8 79 aa11.75□□□□□ -0.53
UPF3A-203ENST00000474056 SMIM15Q7Z3B0 74 aa11.75□□□□□ -0.53
UPF3A-203ENST00000474056 LINC00269Q8N2A0 174 aa11.75□□□□□ -0.53
UPF3A-203ENST00000474056 C20orf203Q8NBC4 194 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms