RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MANBALQ9NQG1 85 aa12.3□□□□□ -0.44
CCDC88B-206ENST00000473405 KIF25-AS1Q9Y6Z4 181 aa12.3□□□□□ -0.44
CCDC88B-206ENST00000473405 EIF5AP63241 154 aaKnown RBP12.29□□□□□ -0.44
CCDC88B-206ENST00000473405 KCNIP4Q6PIL6 250 aa12.29□□□□□ -0.44
CCDC88B-206ENST00000473405 ENHOQ6UWT2 76 aa12.29□□□□□ -0.44
CCDC88B-206ENST00000473405 LINC00528Q8N1L1 170 aa12.29□□□□□ -0.44
CCDC88B-206ENST00000473405 GNG13Q9P2W3 67 aa12.29□□□□□ -0.44
CCDC88B-206ENST00000473405 TRAV1-1A0A0B4J248 108 aa12.28□□□□□ -0.44
CCDC88B-206ENST00000473405 RBFOX3A6NFN3 312 aa12.28□□□□□ -0.44
CCDC88B-206ENST00000473405 SSTP61278 116 aa12.28□□□□□ -0.44
CCDC88B-206ENST00000473405 Q0VG73 95 aa12.28□□□□□ -0.44
CCDC88B-206ENST00000473405 NTM-AS1Q6ZSK4 140 aa12.28□□□□□ -0.44
CCDC88B-206ENST00000473405 SCXQ7RTU7 201 aa12.28□□□□□ -0.44
CCDC88B-206ENST00000473405 C15orf54Q8N8G6 183 aa12.28□□□□□ -0.44
CCDC88B-206ENST00000473405 VAX2Q9UIW0 290 aa12.28□□□□□ -0.44
CCDC88B-206ENST00000473405 IGLV2-8P01709 118 aa12.27□□□□□ -0.45
CCDC88B-206ENST00000473405 CENPWQ5EE01 88 aa12.27□□□□□ -0.45
CCDC88B-206ENST00000473405 AP1S3Q96PC3 154 aa12.27□□□□□ -0.45
CCDC88B-206ENST00000473405 TMEM262E9PQX1 116 aa12.26□□□□□ -0.45
CCDC88B-206ENST00000473405 F5H697 171 aa12.26□□□□□ -0.45
CCDC88B-206ENST00000473405 GZMBP10144 247 aa12.26□□□□□ -0.45
CCDC88B-206ENST00000473405 CHCHD5Q9BSY4 110 aa12.26□□□□□ -0.45
CCDC88B-206ENST00000473405 C1orf43Q9BWL3 253 aa12.26□□□□□ -0.45
CCDC88B-206ENST00000473405 LRP1Q07954 4544 aaKnown RBP12.26□□□□□ -0.45
CCDC88B-206ENST00000473405 PLA2G1BP04054 148 aaKnown RBP12.25□□□□□ -0.45
CCDC88B-206ENST00000473405 IGLC6P0CF74 106 aa12.25□□□□□ -0.45
CCDC88B-206ENST00000473405 C19orf71A6NCJ1 209 aa12.24□□□□□ -0.45
CCDC88B-206ENST00000473405 CRPP02741 224 aa12.24□□□□□ -0.45
CCDC88B-206ENST00000473405 ANGP03950 147 aaKnown RBP12.24□□□□□ -0.45
CCDC88B-206ENST00000473405 CHAC1Q9BUX1 264 aa12.24□□□□□ -0.45
CCDC88B-206ENST00000473405 TRBV20OR9-2A0A075B6H5 130 aa12.23□□□□□ -0.45
CCDC88B-206ENST00000473405 SMIM17P0DL12 118 aa12.23□□□□□ -0.45
CCDC88B-206ENST00000473405 RAB5CP51148 216 aa12.23□□□□□ -0.45
CCDC88B-206ENST00000473405 FER1L6-AS1Q8NA97 138 aa12.23□□□□□ -0.45
CCDC88B-206ENST00000473405 TPPP3Q9BW30 176 aa12.23□□□□□ -0.45
CCDC88B-206ENST00000473405 RAB19A4D1S5 217 aa12.22□□□□□ -0.45
CCDC88B-206ENST00000473405 M0QY20 66 aa12.22□□□□□ -0.45
CCDC88B-206ENST00000473405 PKIAP61925 76 aa12.22□□□□□ -0.45
CCDC88B-206ENST00000473405 MEF2BQ02080 365 aaPredicted RBP12.22□□□□□ -0.45
CCDC88B-206ENST00000473405 TMEM97Q5BJF2 176 aa12.22□□□□□ -0.45
CCDC88B-206ENST00000473405 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.22□□□□□ -0.45
CCDC88B-206ENST00000473405 OR2D3Q8NGH3 330 aa12.22□□□□□ -0.45
CCDC88B-206ENST00000473405 PRR34Q9NV39 138 aa12.22□□□□□ -0.45
CCDC88B-206ENST00000473405 PKHD1L1Q86WI1 4243 aa12.21□□□□□ -0.45
CCDC88B-206ENST00000473405 GNG4P50150 75 aa12.21□□□□□ -0.45
CCDC88B-206ENST00000473405 SULT1A2P50226 295 aa12.21□□□□□ -0.45
CCDC88B-206ENST00000473405 KRTAP10-4P60372 401 aaPredicted RBP12.21□□□□□ -0.45
CCDC88B-206ENST00000473405 RBX1P62877 108 aa12.21□□□□□ -0.45
CCDC88B-206ENST00000473405 MIAQ16674 131 aa12.21□□□□□ -0.45
CCDC88B-206ENST00000473405 C14orf177Q52M58 125 aa12.21□□□□□ -0.45
CCDC88B-206ENST00000473405 SLC51BQ86UW2 128 aa12.21□□□□□ -0.45
CCDC88B-206ENST00000473405 CIRBP-AS1Q8TBR5 109 aa12.21□□□□□ -0.45
CCDC88B-206ENST00000473405 SMIM12Q96EX1 92 aa12.21□□□□□ -0.45
CCDC88B-206ENST00000473405 USP17L23D6RBM5 183 aa12.2□□□□□ -0.46
CCDC88B-206ENST00000473405 HLA-DQA1P01909 254 aa12.2□□□□□ -0.46
CCDC88B-206ENST00000473405 MGPP08493 103 aa12.2□□□□□ -0.46
CCDC88B-206ENST00000473405 RPS20P60866 119 aaKnown RBP12.2□□□□□ -0.46
CCDC88B-206ENST00000473405 IQCJQ1A5X6 159 aa12.2□□□□□ -0.46
CCDC88B-206ENST00000473405 SUMO4Q6EEV6 95 aa12.2□□□□□ -0.46
CCDC88B-206ENST00000473405 KRTAP26-1Q6PEX3 210 aa12.2□□□□□ -0.46
CCDC88B-206ENST00000473405 CLPSL2Q6UWE3 100 aa12.2□□□□□ -0.46
CCDC88B-206ENST00000473405 TRBV25-1A0A075B6N4 114 aa12.19□□□□□ -0.46
CCDC88B-206ENST00000473405 PDE6DO43924 150 aa12.19□□□□□ -0.46
CCDC88B-206ENST00000473405 GAGE6Q13070 117 aa12.19□□□□□ -0.46
CCDC88B-206ENST00000473405 EIF5AL1Q6IS14 154 aaKnown RBP12.19□□□□□ -0.46
CCDC88B-206ENST00000473405 LINC00269Q8N2A0 174 aa12.19□□□□□ -0.46
CCDC88B-206ENST00000473405 DAZAP1Q96EP5 407 aaKnown RBP12.19□□□□□ -0.46
CCDC88B-206ENST00000473405 FAT3Q8TDW7 4589 aa12.19□□□□□ -0.46
CCDC88B-206ENST00000473405 TEX46H3BTG2 121 aa12.18□□□□□ -0.46
CCDC88B-206ENST00000473405 CACNG7P62955 275 aa12.18□□□□□ -0.46
CCDC88B-206ENST00000473405 P01737 135 aa12.17□□□□□ -0.46
CCDC88B-206ENST00000473405 PRSS1P07477 247 aa12.17□□□□□ -0.46
CCDC88B-206ENST00000473405 BCL2P10415 239 aa12.17□□□□□ -0.46
CCDC88B-206ENST00000473405 DEFB104AQ8WTQ1 72 aa12.17□□□□□ -0.46
CCDC88B-206ENST00000473405 IGHV1-24A0A0C4DH33 117 aa12.16□□□□□ -0.46
CCDC88B-206ENST00000473405 F2Z2F3 143 aa12.16□□□□□ -0.46
CCDC88B-206ENST00000473405 H7C1H1 209 aa12.16□□□□□ -0.46
CCDC88B-206ENST00000473405 LYZL1Q6UWQ5 148 aa12.16□□□□□ -0.46
CCDC88B-206ENST00000473405 MED9Q9NWA0 146 aa12.16□□□□□ -0.46
CCDC88B-206ENST00000473405 KRTAP29-1A8MX34 341 aaPredicted RBP12.15□□□□□ -0.46
CCDC88B-206ENST00000473405 J3QL48 77 aa12.15□□□□□ -0.46
CCDC88B-206ENST00000473405 IFNA1P01562 189 aa12.15□□□□□ -0.46
CCDC88B-206ENST00000473405 CTRLP40313 264 aa12.15□□□□□ -0.46
CCDC88B-206ENST00000473405 XKRY2A2RUG3 117 aa12.14□□□□□ -0.47
CCDC88B-206ENST00000473405 RASL11AQ6T310 242 aa12.14□□□□□ -0.47
CCDC88B-206ENST00000473405 C20orf203Q8NBC4 194 aa12.14□□□□□ -0.47
CCDC88B-206ENST00000473405 TRGC1P0CF51 173 aa12.13□□□□□ -0.47
CCDC88B-206ENST00000473405 NTF3P20783 257 aa12.13□□□□□ -0.47
CCDC88B-206ENST00000473405 REG3AQ06141 175 aa12.13□□□□□ -0.47
CCDC88B-206ENST00000473405 CNFNQ9BYD5 112 aa12.13□□□□□ -0.47
CCDC88B-206ENST00000473405 DPH3P1Q9H4G8 78 aa12.13□□□□□ -0.47
CCDC88B-206ENST00000473405 IGLV10-54A0A075B6I4 117 aa12.12□□□□□ -0.47
CCDC88B-206ENST00000473405 NUDT10Q8NFP7 164 aa12.12□□□□□ -0.47
CCDC88B-206ENST00000473405 NUDT11Q96G61 164 aa12.12□□□□□ -0.47
CCDC88B-206ENST00000473405 PGLYRP4Q96LB8 373 aa12.12□□□□□ -0.47
CCDC88B-206ENST00000473405 TMEM243Q9BU79 118 aa12.12□□□□□ -0.47
CCDC88B-206ENST00000473405 GFRA4Q9GZZ7 299 aa12.12□□□□□ -0.47
CCDC88B-206ENST00000473405 BIN3Q9NQY0 253 aa12.12□□□□□ -0.47
CCDC88B-206ENST00000473405 IGLV4-60A0A075B6I1 120 aa12.11□□□□□ -0.47
CCDC88B-206ENST00000473405 K7EN84 100 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms