RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 PAPPA2Q9BXP8 1791 aa-0.11□□□□□ -2.43
CLK1-209ENST00000472679 NCOA3Q9Y6Q9 1424 aa-0.12□□□□□ -2.43
CLK1-209ENST00000472679 URB1O60287 2271 aaKnown RBP-0.12□□□□□ -2.43
CLK1-209ENST00000472679 TARBP1Q13395 1621 aaKnown RBP-0.12□□□□□ -2.43
CLK1-209ENST00000472679 ZCCHC11Q5TAX3 1644 aaKnown RBP-0.12□□□□□ -2.43
CLK1-209ENST00000472679 PREX2Q70Z35 1606 aa-0.12□□□□□ -2.43
CLK1-209ENST00000472679 LRRC37A2A6NM11 1700 aa-0.12□□□□□ -2.43
CLK1-209ENST00000472679 LOC107984156A0A0G2JMH3 177 aa-0.12□□□□□ -2.43
CLK1-209ENST00000472679 COX6B1P14854 86 aa-0.12□□□□□ -2.43
CLK1-209ENST00000472679 ARL17AQ8IVW1 177 aa-0.12□□□□□ -2.43
CLK1-209ENST00000472679 TMEM229BQ8NBD8 167 aa-0.12□□□□□ -2.43
CLK1-209ENST00000472679 BIN3Q9NQY0 253 aa-0.12□□□□□ -2.43
CLK1-209ENST00000472679 KIAA0100Q14667 2235 aaKnown RBP-0.12□□□□□ -2.43
CLK1-209ENST00000472679 MAGI1Q96QZ7 1491 aaPredicted RBP-0.12□□□□□ -2.43
CLK1-209ENST00000472679 FMN2Q9NZ56 1722 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 TRPM7Q96QT4 1865 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 LAMB1P07942 1786 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 CFTRP13569 1480 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 LOC101927531A0A1B0GV80 90 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 A0A1W2PPB8 328 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 KIR3DP1A8MWS1 328 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 TMEM238C9JI98 176 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 CD3DP04234 171 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 MT1FP04733 61 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 MT1HL1P0DM35 61 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 TPT1P13693 172 aaKnown RBP-0.13□□□□□ -2.43
CLK1-209ENST00000472679 SERPINB1P30740 379 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 CRYBA4P53673 196 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 MAXP61244 160 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 KRTAP19-8Q3LI54 63 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 KRTAP19-7Q3SYF9 63 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 TCTEX1D1Q8N7M0 179 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 C5orf56Q8N8D9 126 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 CDC26Q8NHZ8 85 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 GID8Q9NWU2 228 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 MARF1Q9Y4F3 1742 aaKnown RBP-0.13□□□□□ -2.43
CLK1-209ENST00000472679 MADDQ8WXG6 1647 aa-0.13□□□□□ -2.43
CLK1-209ENST00000472679 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.13□□□□□ -2.43
CLK1-209ENST00000472679 TANC2Q9HCD6 1990 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 NUP210Q8TEM1 1887 aaPredicted RBP-0.14□□□□□ -2.43
CLK1-209ENST00000472679 RGPD8O14715 1765 aaPredicted RBP-0.14□□□□□ -2.43
CLK1-209ENST00000472679 RGPD5Q99666 1765 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 DIP2BQ9P265 1576 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 MYOM2P54296 1465 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 BBIP1A8MTZ0 92 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 C10orf142B7Z368 130 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 SDC2P34741 201 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 DEFB124Q8NES8 71 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 ISOC1Q96CN7 298 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 MRPL35Q9NZE8 188 aaKnown RBP-0.14□□□□□ -2.43
CLK1-209ENST00000472679 SIPA1L2Q9P2F8 1722 aaPredicted RBP-0.14□□□□□ -2.43
CLK1-209ENST00000472679 USP32Q8NFA0 1604 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 MAP3K1Q13233 1512 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 KDM5DQ9BY66 1539 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 DUOX2Q9NRD8 1548 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 CASZ1Q86V15 1759 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 TOPAZ1Q8N9V7 1692 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 PREX1Q8TCU6 1659 aa-0.14□□□□□ -2.43
CLK1-209ENST00000472679 TSC2P49815 1807 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 SPAARA0A1B0GVQ0 90 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 ARL5CA6NH57 179 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 LOC730098B7Z3J9 87 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 MT2AP02795 61 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 SAA1P0DJI8 122 aaPredicted RBP-0.15□□□□□ -2.43
CLK1-209ENST00000472679 S100A11P31949 105 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 KRTAP6-2Q3LI66 62 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 C3orf33Q6P1S2 294 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 DCUN1D2Q6PH85 259 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 C3orf62Q6ZUJ4 267 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 TEX29Q8N6K0 151 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 MRPL36Q9P0J6 103 aaKnown RBP-0.15□□□□□ -2.43
CLK1-209ENST00000472679 COMMD3Q9UBI1 195 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 NFAT5O94916 1531 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 EPRSP07814 1512 aaKnown RBP-0.15□□□□□ -2.43
CLK1-209ENST00000472679 PRDM15P57071 1507 aaPredicted RBP-0.15□□□□□ -2.43
CLK1-209ENST00000472679 ATG2AQ2TAZ0 1938 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 GLI2P10070 1586 aa-0.15□□□□□ -2.43
CLK1-209ENST00000472679 SPHKAPQ2M3C7 1700 aa-0.16□□□□□ -2.43
CLK1-209ENST00000472679 KNDC1Q76NI1 1749 aa-0.16□□□□□ -2.43
CLK1-209ENST00000472679 LRRC9Q6ZRR7 1453 aa-0.16□□□□□ -2.43
CLK1-209ENST00000472679 WDR97A6NE52 1622 aa-0.16□□□□□ -2.43
CLK1-209ENST00000472679 KIF21BO75037 1637 aa-0.16□□□□□ -2.43
CLK1-209ENST00000472679 KIF14Q15058 1648 aa-0.16□□□□□ -2.43
CLK1-209ENST00000472679 RNF17Q9BXT8 1623 aaKnown RBP-0.16□□□□□ -2.43
CLK1-209ENST00000472679 CROCC2H7BZ55 1655 aa-0.16□□□□□ -2.44
CLK1-209ENST00000472679 KRTAP19-2Q3LHN2 52 aa-0.16□□□□□ -2.44
CLK1-209ENST00000472679 BOLA2Q9H3K6 86 aa-0.16□□□□□ -2.44
CLK1-209ENST00000472679 SOGA1O94964 1423 aa-0.16□□□□□ -2.44
CLK1-209ENST00000472679 SYNMO15061 1565 aa-0.16□□□□□ -2.44
CLK1-209ENST00000472679 RGPD1P0DJD0 1748 aa-0.16□□□□□ -2.44
CLK1-209ENST00000472679 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.16□□□□□ -2.44
CLK1-209ENST00000472679 SPAG17Q6Q759 2223 aa-0.17□□□□□ -2.44
CLK1-209ENST00000472679 MAGI3Q5TCQ9 1506 aa-0.17□□□□□ -2.44
CLK1-209ENST00000472679 UGGT2Q9NYU1 1516 aa-0.17□□□□□ -2.44
CLK1-209ENST00000472679 SHPRHQ149N8 1683 aa-0.17□□□□□ -2.44
CLK1-209ENST00000472679 ROBO1Q9Y6N7 1651 aa-0.17□□□□□ -2.44
CLK1-209ENST00000472679 A0A0G2JMZ2 1700 aa-0.17□□□□□ -2.44
CLK1-209ENST00000472679 MAP1LC3B2A6NCE7 125 aa-0.17□□□□□ -2.44
CLK1-209ENST00000472679 IGF2P01344 180 aa-0.17□□□□□ -2.44
CLK1-209ENST00000472679 BCL2P10415 239 aa-0.17□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms