RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 TPPP3Q9BW30 176 aa7.97□□□□□ -1.13
SYNE1-221ENST00000472563 A0A087WX48 190 aa7.96□□□□□ -1.14
SYNE1-221ENST00000472563 TRBV6-8A0A0A6YYG3 113 aa7.96□□□□□ -1.14
SYNE1-221ENST00000472563 KRTAP10-1P60331 282 aa7.96□□□□□ -1.14
SYNE1-221ENST00000472563 ELOBQ15370 118 aa7.96□□□□□ -1.14
SYNE1-221ENST00000472563 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-221ENST00000472563 LYPD6BQ8NI32 183 aa7.96□□□□□ -1.14
SYNE1-221ENST00000472563 COX11Q9Y6N1 276 aa7.96□□□□□ -1.14
SYNE1-221ENST00000472563 TMEM250H0YL14 139 aa7.95□□□□□ -1.14
SYNE1-221ENST00000472563 GCSHP23434 173 aa7.95□□□□□ -1.14
SYNE1-221ENST00000472563 WDR73Q6P4I2 378 aa7.95□□□□□ -1.14
SYNE1-221ENST00000472563 Q8N814 137 aa7.95□□□□□ -1.14
SYNE1-221ENST00000472563 NUDT10Q8NFP7 164 aa7.95□□□□□ -1.14
SYNE1-221ENST00000472563 OCC1Q8TAD7 63 aa7.95□□□□□ -1.14
SYNE1-221ENST00000472563 RMI2Q96E14 147 aa7.95□□□□□ -1.14
SYNE1-221ENST00000472563 NUDT11Q96G61 164 aa7.95□□□□□ -1.14
SYNE1-221ENST00000472563 IGLV5-52A0A0A0MRZ9 124 aa7.94□□□□□ -1.14
SYNE1-221ENST00000472563 M0QY20 66 aa7.94□□□□□ -1.14
SYNE1-221ENST00000472563 TMEM97Q5BJF2 176 aa7.94□□□□□ -1.14
SYNE1-221ENST00000472563 KCNIP4Q6PIL6 250 aa7.94□□□□□ -1.14
SYNE1-221ENST00000472563 LYZL1Q6UWQ5 148 aa7.94□□□□□ -1.14
SYNE1-221ENST00000472563 KLK12Q9UKR0 248 aa7.94□□□□□ -1.14
SYNE1-221ENST00000472563 H7C1H1 209 aa7.93□□□□□ -1.14
SYNE1-221ENST00000472563 K7EN84 100 aa7.93□□□□□ -1.14
SYNE1-221ENST00000472563 TRGC1P0CF51 173 aa7.93□□□□□ -1.14
SYNE1-221ENST00000472563 CTRLP40313 264 aa7.93□□□□□ -1.14
SYNE1-221ENST00000472563 XGP55808 180 aa7.93□□□□□ -1.14
SYNE1-221ENST00000472563 PKIAP61925 76 aa7.93□□□□□ -1.14
SYNE1-221ENST00000472563 DNAJC30Q96LL9 226 aa7.93□□□□□ -1.14
SYNE1-221ENST00000472563 CNFNQ9BYD5 112 aa7.93□□□□□ -1.14
SYNE1-221ENST00000472563 RPP21Q9H633 154 aaKnown RBP7.93□□□□□ -1.14
SYNE1-221ENST00000472563 TMEM262E9PQX1 116 aa7.92□□□□□ -1.14
SYNE1-221ENST00000472563 MGPP08493 103 aa7.92□□□□□ -1.14
SYNE1-221ENST00000472563 NTF3P20783 257 aa7.92□□□□□ -1.14
SYNE1-221ENST00000472563 NKX2-5P52952 324 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-221ENST00000472563 WFDC2Q14508 124 aa7.92□□□□□ -1.14
SYNE1-221ENST00000472563 SUMO4Q6EEV6 95 aa7.92□□□□□ -1.14
SYNE1-221ENST00000472563 ATRAIDQ6UW56 229 aa7.92□□□□□ -1.14
SYNE1-221ENST00000472563 NTM-AS1Q6ZSK4 140 aa7.92□□□□□ -1.14
SYNE1-221ENST00000472563 UBE2WQ96B02 151 aa7.92□□□□□ -1.14
SYNE1-221ENST00000472563 CHCHD5Q9BSY4 110 aa7.92□□□□□ -1.14
SYNE1-221ENST00000472563 RNASE7Q9H1E1 156 aaKnown RBP7.92□□□□□ -1.14
SYNE1-221ENST00000472563 DPH3P1Q9H4G8 78 aa7.92□□□□□ -1.14
SYNE1-221ENST00000472563 IGKV2D-24A0A075B6R9 120 aa7.91□□□□□ -1.14
SYNE1-221ENST00000472563 A0A1B0GVG6 124 aa7.91□□□□□ -1.14
SYNE1-221ENST00000472563 NDUFS6O75380 124 aaKnown RBP7.91□□□□□ -1.14
SYNE1-221ENST00000472563 Q0VG73 95 aa7.91□□□□□ -1.14
SYNE1-221ENST00000472563 FAT1Q14517 4588 aa7.9□□□□□ -1.14
SYNE1-221ENST00000472563 IQCJQ1A5X6 159 aa7.9□□□□□ -1.14
SYNE1-221ENST00000472563 MPV17L2Q567V2 206 aa7.9□□□□□ -1.14
SYNE1-221ENST00000472563 RASL11AQ6T310 242 aa7.9□□□□□ -1.14
SYNE1-221ENST00000472563 ENHOQ6UWT2 76 aa7.9□□□□□ -1.14
SYNE1-221ENST00000472563 FAM231DQ6ZW35 169 aa7.9□□□□□ -1.14
SYNE1-221ENST00000472563 BAALCQ8WXS3 180 aa7.9□□□□□ -1.14
SYNE1-221ENST00000472563 TMEM70Q9BUB7 260 aa7.9□□□□□ -1.14
SYNE1-221ENST00000472563 TRBV25-1A0A075B6N4 114 aa7.89□□□□□ -1.15
SYNE1-221ENST00000472563 LECT2O14960 151 aa7.89□□□□□ -1.15
SYNE1-221ENST00000472563 TWIST1Q15672 202 aa7.89□□□□□ -1.15
SYNE1-221ENST00000472563 C15orf54Q8N8G6 183 aa7.89□□□□□ -1.15
SYNE1-221ENST00000472563 Q8N976 141 aa7.89□□□□□ -1.15
SYNE1-221ENST00000472563 GTSF1Q8WW33 167 aa7.89□□□□□ -1.15
SYNE1-221ENST00000472563 EIF5A2Q9GZV4 153 aaKnown RBP7.89□□□□□ -1.15
SYNE1-221ENST00000472563 NIT2Q9NQR4 276 aa7.89□□□□□ -1.15
SYNE1-221ENST00000472563 IGHV1-24A0A0C4DH33 117 aa7.88□□□□□ -1.15
SYNE1-221ENST00000472563 A8MWL6 223 aa7.88□□□□□ -1.15
SYNE1-221ENST00000472563 GATCO43716 136 aaKnown RBP7.88□□□□□ -1.15
SYNE1-221ENST00000472563 ANGP03950 147 aaKnown RBP7.88□□□□□ -1.15
SYNE1-221ENST00000472563 CEBPGP53567 150 aa7.88□□□□□ -1.15
SYNE1-221ENST00000472563 RBX1P62877 108 aa7.88□□□□□ -1.15
SYNE1-221ENST00000472563 CT83Q5H943 113 aa7.88□□□□□ -1.15
SYNE1-221ENST00000472563 FRZBQ92765 325 aa7.88□□□□□ -1.15
SYNE1-221ENST00000472563 FAM210AQ96ND0 272 aa7.88□□□□□ -1.15
SYNE1-221ENST00000472563 C1orf43Q9BWL3 253 aa7.88□□□□□ -1.15
SYNE1-221ENST00000472563 EPM2AB3EWF7 344 aa7.87□□□□□ -1.15
SYNE1-221ENST00000472563 CRPP02741 224 aa7.87□□□□□ -1.15
SYNE1-221ENST00000472563 FOXA3P55318 350 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-221ENST00000472563 MIAQ16674 131 aa7.87□□□□□ -1.15
SYNE1-221ENST00000472563 PGLYRP4Q96LB8 373 aa7.87□□□□□ -1.15
SYNE1-221ENST00000472563 SMIM7Q9BQ49 75 aa7.87□□□□□ -1.15
SYNE1-221ENST00000472563 PRR34Q9NV39 138 aa7.87□□□□□ -1.15
SYNE1-221ENST00000472563 DNAH8Q96JB1 4490 aa7.87□□□□□ -1.15
SYNE1-221ENST00000472563 SRP19P09132 144 aaKnown RBP7.86□□□□□ -1.15
SYNE1-221ENST00000472563 GAGE6Q13070 117 aa7.86□□□□□ -1.15
SYNE1-221ENST00000472563 SMIM15Q7Z3B0 74 aa7.86□□□□□ -1.15
SYNE1-221ENST00000472563 LINC01551Q86U37 167 aa7.86□□□□□ -1.15
SYNE1-221ENST00000472563 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-221ENST00000472563 ZNF727A8MUV8 499 aa7.85□□□□□ -1.15
SYNE1-221ENST00000472563 LINC00269Q8N2A0 174 aa7.85□□□□□ -1.15
SYNE1-221ENST00000472563 GATD1Q8NB37 220 aa7.85□□□□□ -1.15
SYNE1-221ENST00000472563 TMEM243Q9BU79 118 aa7.85□□□□□ -1.15
SYNE1-221ENST00000472563 FAM30AQ9NZY2 134 aa7.85□□□□□ -1.15
SYNE1-221ENST00000472563 A0A1B0GUV1 79 aa7.84□□□□□ -1.15
SYNE1-221ENST00000472563 FAM231BA6NCW3 169 aa7.84□□□□□ -1.15
SYNE1-221ENST00000472563 COTL1Q14019 142 aa7.84□□□□□ -1.15
SYNE1-221ENST00000472563 C14orf177Q52M58 125 aa7.84□□□□□ -1.15
SYNE1-221ENST00000472563 TEX261Q6UWH6 196 aa7.84□□□□□ -1.15
SYNE1-221ENST00000472563 Q6ZSA8 131 aa7.84□□□□□ -1.15
SYNE1-221ENST00000472563 TSKUQ8WUA8 353 aa7.84□□□□□ -1.15
SYNE1-221ENST00000472563 GFRA4Q9GZZ7 299 aa7.84□□□□□ -1.15
SYNE1-221ENST00000472563 OSTCQ9NRP0 149 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms