RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 GAGE5Q13069 117 aa10.18□□□□□ -0.78
CCDC88A-211ENST00000471947 GAGE13Q4V321 117 aa10.18□□□□□ -0.78
CCDC88A-211ENST00000471947 ORMDL2Q53FV1 153 aa10.18□□□□□ -0.78
CCDC88A-211ENST00000471947 MRPL53Q96EL3 112 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-211ENST00000471947 NOP10Q9NPE3 64 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-211ENST00000471947 OTOGQ6ZRI0 2925 aa10.18□□□□□ -0.78
CCDC88A-211ENST00000471947 MAP6D1Q9H9H5 199 aa10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 K7EMT4 169 aa10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 LGALS9BQ3B8N2 356 aa10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 LGALS9CQ6DKI2 356 aa10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 ZNF575Q86XF7 245 aa10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 ZNRF2Q8NHG8 242 aa10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 SPAG8Q99932 426 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 Q1RN00 199 aa10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 LINC01006Q8NI28 216 aa10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 VPS25Q9BRG1 176 aa10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 VCX2Q9H322 139 aa10.17□□□□□ -0.78
CCDC88A-211ENST00000471947 ZNF469Q96JG9 3925 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 RBMY1A1P0DJD3 496 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 RBMY1CP0DJD4 496 aa10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 RBMY1FQ15415 496 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 ORAOV1Q8WV07 137 aa10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 A0A096LNT2 108 aa10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 TRAV13-1A0A0B4J241 112 aa10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 VCYO14598 125 aa10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 FOXI2Q6ZQN5 318 aa10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 MAPKAPK5-AS1Q8N8E1 139 aa10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 CHAC1Q9BUX1 264 aa10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 MRPS16Q9Y3D3 137 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 MRAP2Q96G30 205 aa10.16□□□□□ -0.78
CCDC88A-211ENST00000471947 A6NDN8 102 aa10.15□□□□□ -0.78
CCDC88A-211ENST00000471947 H3BMM0 161 aa10.15□□□□□ -0.78
CCDC88A-211ENST00000471947 FXYD2P54710 66 aa10.15□□□□□ -0.78
CCDC88A-211ENST00000471947 AMTNQ6UX39 209 aa10.15□□□□□ -0.78
CCDC88A-211ENST00000471947 PRADC1Q9BSG0 188 aa10.15□□□□□ -0.78
CCDC88A-211ENST00000471947 COX11Q9Y6N1 276 aa10.15□□□□□ -0.78
CCDC88A-211ENST00000471947 CCL25O15444 150 aa10.15□□□□□ -0.78
CCDC88A-211ENST00000471947 DEFB114Q30KQ6 69 aa10.15□□□□□ -0.78
CCDC88A-211ENST00000471947 ATP6V0BQ99437 205 aa10.15□□□□□ -0.78
CCDC88A-211ENST00000471947 TRGV11A0A075B6L2 103 aa10.15□□□□□ -0.79
CCDC88A-211ENST00000471947 ZFP2Q6ZN57 461 aa10.15□□□□□ -0.79
CCDC88A-211ENST00000471947 C11orf68Q9H3H3 251 aaKnown RBP10.15□□□□□ -0.79
CCDC88A-211ENST00000471947 CR1P17927 2039 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 H7C1H1 209 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 DEFB125Q8N687 156 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 LINC00482Q8N8I6 264 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 PSMG3-AS1Q96PY0 264 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 A0A0J9YXV3 536 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 SCGB1C2P0DMR2 95 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 TOMM7Q9P0U1 55 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 TRAV2A0A0B4J234 112 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 A8MZ25 164 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 INSP01308 110 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 LENEPQ9Y5L5 61 aa10.14□□□□□ -0.79
CCDC88A-211ENST00000471947 TRBV25-1A0A075B6N4 114 aa10.13□□□□□ -0.79
CCDC88A-211ENST00000471947 RBMY1BA6NDE4 496 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-211ENST00000471947 RBMY1EA6NEQ0 496 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-211ENST00000471947 RBMY1DP0C7P1 496 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-211ENST00000471947 U3KQK5 164 aa10.13□□□□□ -0.79
CCDC88A-211ENST00000471947 VWFP04275 2813 aa10.13□□□□□ -0.79
CCDC88A-211ENST00000471947 LGALS3P17931 250 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-211ENST00000471947 Q6ZTI0 123 aa10.12□□□□□ -0.79
CCDC88A-211ENST00000471947 C11orf86A6NJI1 115 aa10.12□□□□□ -0.79
CCDC88A-211ENST00000471947 TMEM262E9PQX1 116 aa10.12□□□□□ -0.79
CCDC88A-211ENST00000471947 BAALCQ8WXS3 180 aa10.12□□□□□ -0.79
CCDC88A-211ENST00000471947 KLLNB2CW77 178 aa10.12□□□□□ -0.79
CCDC88A-211ENST00000471947 F8VRH5 84 aa10.12□□□□□ -0.79
CCDC88A-211ENST00000471947 TRGV4A0A0C4DH28 118 aa10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 LY6G6DO95868 133 aa10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 HLA-DRB4P13762 266 aa10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 ZNF415Q09FC8 603 aa10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 CLPSL2Q6UWE3 100 aa10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 HLA-DRB4X5D2U9 266 aa10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 A0A087WX48 190 aa10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 CIDEAO60543 219 aa10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 CRIP2P52943 208 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 HERVK_113P61574 105 aa10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 GEMIN7Q9H840 131 aaKnown RBP10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 SPCS1Q9Y6A9 102 aa10.11□□□□□ -0.79
CCDC88A-211ENST00000471947 SMIM13P0DJ93 91 aa10.1□□□□□ -0.79
CCDC88A-211ENST00000471947 C2orf91Q6ZV80 131 aa10.1□□□□□ -0.79
CCDC88A-211ENST00000471947 ODF3L2Q3SX64 289 aa10.1□□□□□ -0.79
CCDC88A-211ENST00000471947 LURAP1LQ8IV03 231 aa10.1□□□□□ -0.79
CCDC88A-211ENST00000471947 C4orf3Q8WVX3 66 aa10.1□□□□□ -0.79
CCDC88A-211ENST00000471947 ZNF479Q96JC4 524 aa10.1□□□□□ -0.79
CCDC88A-211ENST00000471947 ZNF580Q9UK33 172 aa10.1□□□□□ -0.79
CCDC88A-211ENST00000471947 TENM1Q9UKZ4 2725 aa10.1□□□□□ -0.79
CCDC88A-211ENST00000471947 TAX1BP3O14907 124 aa10.1□□□□□ -0.79
CCDC88A-211ENST00000471947 Q6ZSN1 163 aa10.1□□□□□ -0.79
CCDC88A-211ENST00000471947 TRAV8-3A0A0A6YYJ7 113 aa10.09□□□□□ -0.79
CCDC88A-211ENST00000471947 CRXO43186 299 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-211ENST00000471947 COTL1Q14019 142 aa10.09□□□□□ -0.79
CCDC88A-211ENST00000471947 DAND5Q8N907 189 aa10.09□□□□□ -0.79
CCDC88A-211ENST00000471947 PSMB2P49721 201 aa10.09□□□□□ -0.79
CCDC88A-211ENST00000471947 NSD1Q96L73 2696 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-211ENST00000471947 CRYGDP07320 174 aa10.09□□□□□ -0.79
CCDC88A-211ENST00000471947 TSSC4Q9Y5U2 329 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-211ENST00000471947 FGF6P10767 208 aa10.08□□□□□ -0.8
CCDC88A-211ENST00000471947 HSD52Q0P140 79 aa10.08□□□□□ -0.8
CCDC88A-211ENST00000471947 CNFNQ9BYD5 112 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms