RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 SPRNQ5BIV9 151 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 PIP4P2Q8N4L2 257 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 ZFAND2AQ8N6M9 145 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 NDUFV3P56181 108 aaKnown RBP5.37□□□□□ -1.55
SYNE1-216ENST00000461872 C9orf153Q5TBE3 101 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 ARHGAP32A7KAX9 2087 aa5.37□□□□□ -1.55
SYNE1-216ENST00000461872 A0A1B0GX51 115 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 MRPS36P82909 103 aaKnown RBP5.36□□□□□ -1.55
SYNE1-216ENST00000461872 J3KT08 172 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 NDPQ00604 133 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 TRGV2A0A075B6R0 118 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 CCDC140Q96MF4 163 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 BPESC1Q9GZL8 116 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 PTPN13Q12923 2485 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 TRAV26-2A0A0B4J265 109 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 POLR2KP53803 58 aaKnown RBP5.36□□□□□ -1.55
SYNE1-216ENST00000461872 NTN5Q8WTR8 489 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-216ENST00000461872 ITLN2Q8WWU7 325 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-216ENST00000461872 A0A087WWL8 130 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 UBL5Q9BZL1 73 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 MSRB1Q9NZV6 116 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 F8WEM9 126 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 TMEM243Q9BU79 118 aa5.36□□□□□ -1.55
SYNE1-216ENST00000461872 TCF15Q12870 199 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 NCOR2Q9Y618 2525 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 SS18Q15532 418 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 IGHV3-30P01768 117 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 IGHV3-30-5P0DP03 117 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 POM121L12Q8N7R1 296 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 ZNF80P51504 273 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-216ENST00000461872 VPREB3Q9UKI3 123 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 G3V318 75 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 COX7A2LO14548 114 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 UQCRQO14949 82 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 APRG1Q8IVJ8 170 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 CCDC168Q8NDH2 2452 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 PRRC2CQ9Y520 2896 aaKnown RBP5.35□□□□□ -1.55
SYNE1-216ENST00000461872 SVIPQ8NHG7 77 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 A0A096LNJ9 63 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 NOTCH2Q04721 2471 aa5.35□□□□□ -1.55
SYNE1-216ENST00000461872 TLN2Q9Y4G6 2542 aa5.34□□□□□ -1.55
SYNE1-216ENST00000461872 LRRK2Q5S007 2527 aa5.34□□□□□ -1.55
SYNE1-216ENST00000461872 TRAV8-3A0A0A6YYJ7 113 aa5.34□□□□□ -1.55
SYNE1-216ENST00000461872 TMEM223A0PJW6 202 aa5.34□□□□□ -1.55
SYNE1-216ENST00000461872 TCL1BO95988 128 aa5.34□□□□□ -1.55
SYNE1-216ENST00000461872 VSIG2Q96IQ7 327 aa5.34□□□□□ -1.55
SYNE1-216ENST00000461872 IGHV3-33P01772 117 aa5.34□□□□□ -1.55
SYNE1-216ENST00000461872 UBE2DNLQ8IWF7 75 aa5.34□□□□□ -1.55
SYNE1-216ENST00000461872 GAGE2AQ6NT46 116 aa5.34□□□□□ -1.55
SYNE1-216ENST00000461872 IGLV2-18A0A075B6J9 118 aa5.34□□□□□ -1.56
SYNE1-216ENST00000461872 NDUFA1O15239 70 aa5.34□□□□□ -1.56
SYNE1-216ENST00000461872 LOXL1Q08397 574 aaPredicted RBP5.34□□□□□ -1.56
SYNE1-216ENST00000461872 IGHV3-30-3P0DP02 117 aa5.33□□□□□ -1.56
SYNE1-216ENST00000461872 JPT2Q9H910 190 aa5.33□□□□□ -1.56
SYNE1-216ENST00000461872 IGKV2D-26A0A0A0MRZ7 120 aa5.33□□□□□ -1.56
SYNE1-216ENST00000461872 HIST1H4AP62805 103 aaKnown RBP5.33□□□□□ -1.56
SYNE1-216ENST00000461872 RPL39LQ96EH5 51 aaKnown RBP5.33□□□□□ -1.56
SYNE1-216ENST00000461872 C9orf85Q96MD7 179 aa5.33□□□□□ -1.56
SYNE1-216ENST00000461872 MUSTN1Q8IVN3 82 aa5.33□□□□□ -1.56
SYNE1-216ENST00000461872 TRGV4A0A0C4DH28 118 aa5.33□□□□□ -1.56
SYNE1-216ENST00000461872 IGHV3-16A0A0C4DH30 117 aa5.33□□□□□ -1.56
SYNE1-216ENST00000461872 HOXD3P31249 432 aaPredicted RBP5.33□□□□□ -1.56
SYNE1-216ENST00000461872 hADV29S1A0JD25 119 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 M0QY20 66 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 ORMDL1Q9P0S3 153 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 LINC00158P58513 81 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 TMEM219Q86XT9 240 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 TRGV1A0A0A0MS02 117 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 PRAC2D3DTV9 90 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 LST1O00453 97 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 GATA1P15976 413 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-216ENST00000461872 IGFL4Q6B9Z1 124 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 PAX4O43316 350 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 HIST2H2BCQ6DN03 193 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 HIST2H2BDQ6DRA6 164 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 CHCHD5Q9BSY4 110 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 IGHV3-53P01767 116 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 LINC00467Q9BRT7 94 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 LAMTOR3Q9UHA4 124 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 IGIPA6NJ69 53 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 ATP5EP56381 51 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-216ENST00000461872 ASPHD1Q5U4P2 390 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 C11orf71Q6IPW1 123 aa5.32□□□□□ -1.56
SYNE1-216ENST00000461872 C6orf226Q5I0X4 101 aa5.31□□□□□ -1.56
SYNE1-216ENST00000461872 C16orf74Q96GX8 76 aa5.31□□□□□ -1.56
SYNE1-216ENST00000461872 CSDC2Q9Y534 153 aaKnown RBP5.31□□□□□ -1.56
SYNE1-216ENST00000461872 TMEM61Q8N0U2 210 aa5.31□□□□□ -1.56
SYNE1-216ENST00000461872 A0A0J9YXV3 536 aa5.31□□□□□ -1.56
SYNE1-216ENST00000461872 A6NDX4 124 aa5.31□□□□□ -1.56
SYNE1-216ENST00000461872 K7EQG2 157 aa5.31□□□□□ -1.56
SYNE1-216ENST00000461872 ZNF22P17026 224 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-216ENST00000461872 A0A1W2PRX2 142 aa5.31□□□□□ -1.56
SYNE1-216ENST00000461872 Q9H8V8 135 aa5.31□□□□□ -1.56
SYNE1-216ENST00000461872 SPINK13Q1W4C9 94 aa5.3□□□□□ -1.56
SYNE1-216ENST00000461872 MRAPQ8TCY5 172 aa5.3□□□□□ -1.56
SYNE1-216ENST00000461872 C10orf105Q8TEF2 133 aa5.3□□□□□ -1.56
SYNE1-216ENST00000461872 K7EQD1 137 aa5.3□□□□□ -1.56
SYNE1-216ENST00000461872 BAALC-AS2P0C853 105 aa5.3□□□□□ -1.56
SYNE1-216ENST00000461872 TMEM258P61165 79 aa5.3□□□□□ -1.56
SYNE1-216ENST00000461872 SMAD5-AS1Q9Y6J3 95 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms