RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PIP4P1Q86T03 277 aa8.72□□□□□ -1.01
CPSF3-202ENST00000460593 IGHV1-69DA0A0B4J2H0 117 aa8.72□□□□□ -1.01
CPSF3-202ENST00000460593 LGALS9O00182 355 aa8.72□□□□□ -1.01
CPSF3-202ENST00000460593 P0DMU3 169 aa8.72□□□□□ -1.01
CPSF3-202ENST00000460593 FAM231AP0DMU4 169 aa8.72□□□□□ -1.01
CPSF3-202ENST00000460593 FAM231CP0DMU5 169 aa8.72□□□□□ -1.01
CPSF3-202ENST00000460593 SAA4P35542 130 aa8.72□□□□□ -1.01
CPSF3-202ENST00000460593 CSMD2Q7Z408 3487 aa8.72□□□□□ -1.01
CPSF3-202ENST00000460593 IGHV3-73A0A0B4J1V6 119 aa8.71□□□□□ -1.01
CPSF3-202ENST00000460593 TRBV10-2A0A0K0K1G8 114 aa8.71□□□□□ -1.01
CPSF3-202ENST00000460593 M0R1W7 72 aa8.71□□□□□ -1.01
CPSF3-202ENST00000460593 LEPROTO15243 131 aa8.71□□□□□ -1.01
CPSF3-202ENST00000460593 FAM110AQ9BQ89 295 aa8.71□□□□□ -1.01
CPSF3-202ENST00000460593 MDFICQ9P1T7 246 aa8.71□□□□□ -1.01
CPSF3-202ENST00000460593 EBI3Q14213 229 aa8.71□□□□□ -1.02
CPSF3-202ENST00000460593 CRYBG3Q68DQ2 2970 aa8.71□□□□□ -1.02
CPSF3-202ENST00000460593 TMEM141Q96I45 108 aa8.71□□□□□ -1.02
CPSF3-202ENST00000460593 TIMM17AQ99595 171 aa8.71□□□□□ -1.02
CPSF3-202ENST00000460593 A0A0B4J2C4 111 aa8.71□□□□□ -1.02
CPSF3-202ENST00000460593 DOPEY2Q9Y3R5 2298 aa8.71□□□□□ -1.02
CPSF3-202ENST00000460593 KLK9Q9UKQ9 250 aa8.7□□□□□ -1.02
CPSF3-202ENST00000460593 SOCS3O14543 225 aa8.7□□□□□ -1.02
CPSF3-202ENST00000460593 ICOSQ9Y6W8 199 aa8.7□□□□□ -1.02
CPSF3-202ENST00000460593 NACAE9PAV3 2078 aa8.7□□□□□ -1.02
CPSF3-202ENST00000460593 A0A0U1RRA0 63 aa8.69□□□□□ -1.02
CPSF3-202ENST00000460593 IGHV3-30-3P0DP02 117 aa8.69□□□□□ -1.02
CPSF3-202ENST00000460593 PPDPFQ9H3Y8 114 aa8.69□□□□□ -1.02
CPSF3-202ENST00000460593 IGHV4OR15-8A0A075B7B6 117 aa8.69□□□□□ -1.02
CPSF3-202ENST00000460593 A0A087WW49 117 aa8.69□□□□□ -1.02
CPSF3-202ENST00000460593 M0R2P5 195 aa8.69□□□□□ -1.02
CPSF3-202ENST00000460593 UBTD1Q9HAC8 227 aa8.69□□□□□ -1.02
CPSF3-202ENST00000460593 TRBV7-1A0A0A6YYK4 115 aa8.69□□□□□ -1.02
CPSF3-202ENST00000460593 OVOL1O14753 267 aa8.69□□□□□ -1.02
CPSF3-202ENST00000460593 MINOS1Q5TGZ0 78 aa8.69□□□□□ -1.02
CPSF3-202ENST00000460593 PPP1R17O96001 155 aa8.68□□□□□ -1.02
CPSF3-202ENST00000460593 LITAFQ99732 161 aa8.68□□□□□ -1.02
CPSF3-202ENST00000460593 Q9UF83 564 aa8.68□□□□□ -1.02
CPSF3-202ENST00000460593 HTN1P15515 57 aa8.68□□□□□ -1.02
CPSF3-202ENST00000460593 RPL13AP40429 203 aaKnown RBP8.68□□□□□ -1.02
CPSF3-202ENST00000460593 LENEPQ9Y5L5 61 aa8.68□□□□□ -1.02
CPSF3-202ENST00000460593 C2CD3Q4AC94 2353 aa8.68□□□□□ -1.02
CPSF3-202ENST00000460593 IGLV4-3A0A075B6K6 122 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 TRBV27A0A0K0K1C4 114 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 PROK1P58294 105 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 DUX5Q96PT3 197 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.67□□□□□ -1.02
CPSF3-202ENST00000460593 TRAV41A0A0B4J266 112 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 PRM2P04554 102 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 SPG11Q96JI7 2443 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 PTPRQQ9UMZ3 2332 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 TRBV30A0A0K0K1B3 111 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 FAM19A4Q96LR4 140 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 RHPN1-AS1Q9BWJ2 59 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 SIRPDQ9H106 197 aa8.67□□□□□ -1.02
CPSF3-202ENST00000460593 FAM236AA0A1B0GUQ0 79 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 FAM236BA0A1B0GV22 79 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 I3L3M4 83 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 M0QY20 66 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 LY6EQ16553 131 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 TIMM21Q9BVV7 248 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 NOTCH3Q9UM47 2321 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 CCL21O00585 134 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 BRD3OSQ6XYD6 125 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 POM121L12Q8N7R1 296 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 MINOS1-NBL1R4GNA1 71 aa8.66□□□□□ -1.02
CPSF3-202ENST00000460593 CSPG4Q6UVK1 2322 aa8.65□□□□□ -1.02
CPSF3-202ENST00000460593 TRGV11A0A075B6L2 103 aa8.65□□□□□ -1.02
CPSF3-202ENST00000460593 Q6Q795 121 aa8.65□□□□□ -1.02
CPSF3-202ENST00000460593 IGF2-ASQ6U949 168 aa8.65□□□□□ -1.02
CPSF3-202ENST00000460593 C5orf56Q8N8D9 126 aa8.65□□□□□ -1.02
CPSF3-202ENST00000460593 KLK5Q9Y337 293 aaPredicted RBP8.65□□□□□ -1.02
CPSF3-202ENST00000460593 NXPH4O95158 308 aa8.65□□□□□ -1.02
CPSF3-202ENST00000460593 CD28P10747 220 aa8.65□□□□□ -1.02
CPSF3-202ENST00000460593 C20orf203Q8NBC4 194 aa8.65□□□□□ -1.02
CPSF3-202ENST00000460593 ZNF625Q96I27 306 aaPredicted RBP8.65□□□□□ -1.02
CPSF3-202ENST00000460593 IGF2RP11717 2491 aa8.65□□□□□ -1.02
CPSF3-202ENST00000460593 M0QXV9 152 aa8.65□□□□□ -1.03
CPSF3-202ENST00000460593 ID1P41134 155 aa8.65□□□□□ -1.03
CPSF3-202ENST00000460593 LINC01587Q99440 93 aa8.65□□□□□ -1.03
CPSF3-202ENST00000460593 NDUFA12Q9UI09 145 aa8.65□□□□□ -1.03
CPSF3-202ENST00000460593 KNCNA6PVL3 124 aa8.64□□□□□ -1.03
CPSF3-202ENST00000460593 MED14OSP0DP75 135 aa8.64□□□□□ -1.03
CPSF3-202ENST00000460593 LOC107984640A0A0U1RRK4 108 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 OOSP1A8MZH6 123 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 PF4V1P10720 104 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 TMEM95Q3KNT9 176 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 SMCR5Q8TEV8 140 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 FAM104AQ969W3 186 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 SPINK13Q1W4C9 94 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 VPREB3Q9UKI3 123 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 A0A1W2PPR1 153 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 KLLNB2CW77 178 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 RS1O15537 224 aa8.63□□□□□ -1.03
CPSF3-202ENST00000460593 IGHV3-16A0A0C4DH30 117 aa8.62□□□□□ -1.03
CPSF3-202ENST00000460593 IGHV1-69P01742 117 aa8.62□□□□□ -1.03
CPSF3-202ENST00000460593 LINC00694P0DN24 101 aa8.62□□□□□ -1.03
CPSF3-202ENST00000460593 MRPL23Q16540 153 aaKnown RBP8.62□□□□□ -1.03
CPSF3-202ENST00000460593 LST1O00453 97 aa8.61□□□□□ -1.03
CPSF3-202ENST00000460593 NSUN5P1Q3KNT7 163 aa8.61□□□□□ -1.03
CPSF3-202ENST00000460593 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms