RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CACNG7P62955 275 aa14.12□□□□□ -0.15
HMGB3-205ENST00000455596 ALKAL2Q6UX46 152 aa14.12□□□□□ -0.15
HMGB3-205ENST00000455596 COX11Q9Y6N1 276 aa14.12□□□□□ -0.15
HMGB3-205ENST00000455596 TRBV6-8A0A0A6YYG3 113 aa14.11□□□□□ -0.15
HMGB3-205ENST00000455596 F2Z2F3 143 aa14.11□□□□□ -0.15
HMGB3-205ENST00000455596 BLOC1S1P78537 153 aa14.11□□□□□ -0.15
HMGB3-205ENST00000455596 ELOBQ15370 118 aa14.11□□□□□ -0.15
HMGB3-205ENST00000455596 RMI2Q96E14 147 aa14.11□□□□□ -0.15
HMGB3-205ENST00000455596 KLK12Q9UKR0 248 aa14.11□□□□□ -0.15
HMGB3-205ENST00000455596 HSPG2P98160 4391 aa14.1□□□□□ -0.15
HMGB3-205ENST00000455596 MGPP08493 103 aa14.09□□□□□ -0.15
HMGB3-205ENST00000455596 TMEM262E9PQX1 116 aa14.08□□□□□ -0.16
HMGB3-205ENST00000455596 XGP55808 180 aa14.08□□□□□ -0.16
HMGB3-205ENST00000455596 TMEM97Q5BJF2 176 aa14.08□□□□□ -0.16
HMGB3-205ENST00000455596 NUDT10Q8NFP7 164 aa14.08□□□□□ -0.16
HMGB3-205ENST00000455596 NUDT11Q96G61 164 aa14.08□□□□□ -0.16
HMGB3-205ENST00000455596 H7C1H1 209 aa14.07□□□□□ -0.16
HMGB3-205ENST00000455596 LYZL1Q6UWQ5 148 aa14.07□□□□□ -0.16
HMGB3-205ENST00000455596 IGKV2D-24A0A075B6R9 120 aa14.06□□□□□ -0.16
HMGB3-205ENST00000455596 TRGC1P0CF51 173 aa14.06□□□□□ -0.16
HMGB3-205ENST00000455596 WFDC2Q14508 124 aa14.06□□□□□ -0.16
HMGB3-205ENST00000455596 LYPD6BQ8NI32 183 aa14.06□□□□□ -0.16
HMGB3-205ENST00000455596 OCC1Q8TAD7 63 aa14.06□□□□□ -0.16
HMGB3-205ENST00000455596 UBE2WQ96B02 151 aa14.06□□□□□ -0.16
HMGB3-205ENST00000455596 DNAJC30Q96LL9 226 aa14.06□□□□□ -0.16
HMGB3-205ENST00000455596 DNAH5Q8TE73 4624 aa14.06□□□□□ -0.16
HMGB3-205ENST00000455596 TMEM250H0YL14 139 aa14.05□□□□□ -0.16
HMGB3-205ENST00000455596 LECT2O14960 151 aa14.05□□□□□ -0.16
HMGB3-205ENST00000455596 NTF3P20783 257 aa14.05□□□□□ -0.16
HMGB3-205ENST00000455596 PKIAP61925 76 aa14.05□□□□□ -0.16
HMGB3-205ENST00000455596 Q0VG73 95 aa14.05□□□□□ -0.16
HMGB3-205ENST00000455596 CHCHD5Q9BSY4 110 aa14.05□□□□□ -0.16
HMGB3-205ENST00000455596 RNASE7Q9H1E1 156 aaKnown RBP14.05□□□□□ -0.16
HMGB3-205ENST00000455596 RPP21Q9H633 154 aaKnown RBP14.05□□□□□ -0.16
HMGB3-205ENST00000455596 K7EN84 100 aa14.04□□□□□ -0.16
HMGB3-205ENST00000455596 M0QY20 66 aa14.04□□□□□ -0.16
HMGB3-205ENST00000455596 SUMO4Q6EEV6 95 aa14.04□□□□□ -0.16
HMGB3-205ENST00000455596 WDR73Q6P4I2 378 aa14.04□□□□□ -0.16
HMGB3-205ENST00000455596 BAALCQ8WXS3 180 aa14.04□□□□□ -0.16
HMGB3-205ENST00000455596 DPH3P1Q9H4G8 78 aa14.04□□□□□ -0.16
HMGB3-205ENST00000455596 CTRLP40313 264 aa14.03□□□□□ -0.16
HMGB3-205ENST00000455596 MPV17L2Q567V2 206 aa14.03□□□□□ -0.16
HMGB3-205ENST00000455596 ATRAIDQ6UW56 229 aa14.03□□□□□ -0.16
HMGB3-205ENST00000455596 NTM-AS1Q6ZSK4 140 aa14.03□□□□□ -0.16
HMGB3-205ENST00000455596 TMEM70Q9BUB7 260 aa14.03□□□□□ -0.16
HMGB3-205ENST00000455596 APOBP04114 4563 aaKnown RBP14.02□□□□□ -0.16
HMGB3-205ENST00000455596 EPM2AB3EWF7 344 aa14.02□□□□□ -0.17
HMGB3-205ENST00000455596 CRPP02741 224 aa14.02□□□□□ -0.17
HMGB3-205ENST00000455596 ANGP03950 147 aaKnown RBP14.02□□□□□ -0.17
HMGB3-205ENST00000455596 NKX2-5P52952 324 aaPredicted RBP14.02□□□□□ -0.17
HMGB3-205ENST00000455596 C15orf54Q8N8G6 183 aa14.02□□□□□ -0.17
HMGB3-205ENST00000455596 TRBV25-1A0A075B6N4 114 aa14.01□□□□□ -0.17
HMGB3-205ENST00000455596 RASL11AQ6T310 242 aa14.01□□□□□ -0.17
HMGB3-205ENST00000455596 IGLV2-33A0A075B6J2 118 aaPredicted RBP14□□□□□ -0.17
HMGB3-205ENST00000455596 TWIST1Q15672 202 aa14□□□□□ -0.17
HMGB3-205ENST00000455596 ENHOQ6UWT2 76 aa14□□□□□ -0.17
HMGB3-205ENST00000455596 Q8N976 141 aa14□□□□□ -0.17
HMGB3-205ENST00000455596 C1orf43Q9BWL3 253 aa14□□□□□ -0.17
HMGB3-205ENST00000455596 CNFNQ9BYD5 112 aa14□□□□□ -0.17
HMGB3-205ENST00000455596 CEBPGP53567 150 aa13.99□□□□□ -0.17
HMGB3-205ENST00000455596 EIF5A2Q9GZV4 153 aaKnown RBP13.99□□□□□ -0.17
HMGB3-205ENST00000455596 IGHV1-24A0A0C4DH33 117 aa13.98□□□□□ -0.17
HMGB3-205ENST00000455596 A0A1B0GVG6 124 aa13.98□□□□□ -0.17
HMGB3-205ENST00000455596 IQCJQ1A5X6 159 aa13.98□□□□□ -0.17
HMGB3-205ENST00000455596 NIT2Q9NQR4 276 aa13.98□□□□□ -0.17
HMGB3-205ENST00000455596 GATCO43716 136 aaKnown RBP13.97□□□□□ -0.17
HMGB3-205ENST00000455596 GAGE6Q13070 117 aa13.97□□□□□ -0.17
HMGB3-205ENST00000455596 FAM231DQ6ZW35 169 aa13.97□□□□□ -0.17
HMGB3-205ENST00000455596 FRZBQ92765 325 aa13.97□□□□□ -0.17
HMGB3-205ENST00000455596 NDUFS6O75380 124 aaKnown RBP13.96□□□□□ -0.17
HMGB3-205ENST00000455596 GTSF1Q8WW33 167 aa13.96□□□□□ -0.17
HMGB3-205ENST00000455596 ABCA13Q86UQ4 5058 aa13.95□□□□□ -0.18
HMGB3-205ENST00000455596 RBX1P62877 108 aa13.95□□□□□ -0.18
HMGB3-205ENST00000455596 HAMPP81172 84 aa13.95□□□□□ -0.18
HMGB3-205ENST00000455596 MIAQ16674 131 aa13.95□□□□□ -0.18
HMGB3-205ENST00000455596 Q5VSD8 79 aa13.95□□□□□ -0.18
HMGB3-205ENST00000455596 FAM210AQ96ND0 272 aa13.95□□□□□ -0.18
HMGB3-205ENST00000455596 A8MWL6 223 aa13.94□□□□□ -0.18
HMGB3-205ENST00000455596 SMR3BP02814 79 aaPredicted RBP13.94□□□□□ -0.18
HMGB3-205ENST00000455596 SMIM15Q7Z3B0 74 aa13.94□□□□□ -0.18
HMGB3-205ENST00000455596 PGLYRP4Q96LB8 373 aa13.94□□□□□ -0.18
HMGB3-205ENST00000455596 SMIM7Q9BQ49 75 aa13.94□□□□□ -0.18
HMGB3-205ENST00000455596 FAM30AQ9NZY2 134 aa13.94□□□□□ -0.18
HMGB3-205ENST00000455596 TMEM243Q9BU79 118 aa13.93□□□□□ -0.18
HMGB3-205ENST00000455596 PRR34Q9NV39 138 aa13.93□□□□□ -0.18
HMGB3-205ENST00000455596 C14orf177Q52M58 125 aa13.92□□□□□ -0.18
HMGB3-205ENST00000455596 CT83Q5H943 113 aa13.92□□□□□ -0.18
HMGB3-205ENST00000455596 CLPSL2Q6UWE3 100 aa13.92□□□□□ -0.18
HMGB3-205ENST00000455596 LINC00269Q8N2A0 174 aa13.92□□□□□ -0.18
HMGB3-205ENST00000455596 ZNF727A8MUV8 499 aa13.91□□□□□ -0.18
HMGB3-205ENST00000455596 HLA-DQA1P01909 254 aa13.91□□□□□ -0.18
HMGB3-205ENST00000455596 GATD1Q8NB37 220 aa13.91□□□□□ -0.18
HMGB3-205ENST00000455596 TRAV26-2A0A0B4J265 109 aa13.9□□□□□ -0.18
HMGB3-205ENST00000455596 SRP19P09132 144 aaKnown RBP13.9□□□□□ -0.18
HMGB3-205ENST00000455596 COTL1Q14019 142 aa13.9□□□□□ -0.18
HMGB3-205ENST00000455596 Q6ZSA8 131 aa13.9□□□□□ -0.18
HMGB3-205ENST00000455596 LINC01551Q86U37 167 aa13.9□□□□□ -0.18
HMGB3-205ENST00000455596 BORCS7Q96B45 105 aa13.9□□□□□ -0.18
HMGB3-205ENST00000455596 FAM229AH3BQW9 127 aa13.89□□□□□ -0.19
HMGB3-205ENST00000455596 FOXA3P55318 350 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms