RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 ZNF56Q15929 161 aa6.06□□□□□ -1.44
COL28A1-205ENST00000453441 NEGR1Q7Z3B1 354 aa6.06□□□□□ -1.44
COL28A1-205ENST00000453441 UBE2DNLQ8IWF7 75 aa6.06□□□□□ -1.44
COL28A1-205ENST00000453441 C14orf178Q8N769 122 aaPredicted RBP6.06□□□□□ -1.44
COL28A1-205ENST00000453441 IMMP2LQ96T52 175 aa6.06□□□□□ -1.44
COL28A1-205ENST00000453441 SAMD10Q9BYL1 202 aa6.06□□□□□ -1.44
COL28A1-205ENST00000453441 CTDSP1Q9GZU7 261 aa6.06□□□□□ -1.44
COL28A1-205ENST00000453441 CARHSP1Q9Y2V2 147 aaKnown RBP6.06□□□□□ -1.44
COL28A1-205ENST00000453441 SACSQ9NZJ4 4579 aa6.05□□□□□ -1.44
COL28A1-205ENST00000453441 A0A087WWL8 130 aa6.05□□□□□ -1.44
COL28A1-205ENST00000453441 A0A096LPF7 62 aa6.05□□□□□ -1.44
COL28A1-205ENST00000453441 ADCYAP1P18509 176 aa6.05□□□□□ -1.44
COL28A1-205ENST00000453441 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.05□□□□□ -1.44
COL28A1-205ENST00000453441 NUP35Q8NFH5 326 aa6.05□□□□□ -1.44
COL28A1-205ENST00000453441 PGLYRP4Q96LB8 373 aa6.05□□□□□ -1.44
COL28A1-205ENST00000453441 KRTAP3-1Q9BYR8 98 aa6.05□□□□□ -1.44
COL28A1-205ENST00000453441 JPT2Q9H910 190 aa6.05□□□□□ -1.44
COL28A1-205ENST00000453441 KIF25-AS1Q9Y6Z4 181 aa6.05□□□□□ -1.44
COL28A1-205ENST00000453441 KMT2CQ8NEZ4 4911 aaKnown RBP6.05□□□□□ -1.44
COL28A1-205ENST00000453441 VPS13DQ5THJ4 4388 aa6.05□□□□□ -1.44
COL28A1-205ENST00000453441 TRAV9-1A0A075B6T8 112 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 IGHV3-73A0A0B4J1V6 119 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 MUC21A0A0G2JKD1 596 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 MUC21A0A140T8X8 626 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 F5H697 171 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 RPL36AP83881 106 aaKnown RBP6.04□□□□□ -1.44
COL28A1-205ENST00000453441 RHEBQ15382 184 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 ATP5L2Q7Z4Y8 100 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 RPL36ALQ969Q0 106 aaKnown RBP6.04□□□□□ -1.44
COL28A1-205ENST00000453441 DNAJC30Q96LL9 226 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 UPK3BQ9BT76 320 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 TMEM191AQ9H0A3 160 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 TMEM242Q9NWH2 141 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 MSRB1Q9NZV6 116 aa6.04□□□□□ -1.44
COL28A1-205ENST00000453441 DNAH6Q9C0G6 4158 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 LYSTQ99698 3801 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 A0A087WWC5 75 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 LY6G6CO95867 125 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 MGPP08493 103 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 LINC00694P0DN24 101 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 EVI2AP22794 236 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 LINC00315P59091 139 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 TMEM97Q5BJF2 176 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 KCNIP4Q6PIL6 250 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 SVBPQ8N300 66 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 KRTAP4-11Q9BYQ6 195 aa6.03□□□□□ -1.44
COL28A1-205ENST00000453441 MRPS16Q9Y3D3 137 aaKnown RBP6.03□□□□□ -1.44
COL28A1-205ENST00000453441 TRBV7-3A0A075B6L6 115 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 K7EP13 123 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 SNAPINO95295 136 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 PPP1R17O96001 155 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 S100PP25815 95 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 SSTP61278 116 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 HBBP68871 147 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 RASL11AQ6T310 242 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 Q6ZSN1 163 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 ATP6V0E2Q8NHE4 81 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 MRAP2Q96G30 205 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 BTF3L4Q96K17 158 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 GTSF1LQ9H1H1 148 aa6.02□□□□□ -1.45
COL28A1-205ENST00000453441 RYR2Q92736 4967 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 GAGE12JA6NER3 117 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 M0QY20 66 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 UBE2D3P61077 147 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 UBE2D2P62837 147 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 GAGE1Q13065 139 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 GAGE4Q13068 117 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 GAGE5Q13069 117 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 ESRGQ1W209 222 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 RNF151Q2KHN1 245 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 GAGE13Q4V321 117 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 SUMO4Q6EEV6 95 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 LYPD5Q6UWN5 251 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 DAZ4Q86SG3 579 aaKnown RBP6.01□□□□□ -1.45
COL28A1-205ENST00000453441 GATD1Q8NB37 220 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 CLRN3Q8NCR9 226 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 NIT2Q9NQR4 276 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 DAZ3Q9NR90 486 aaKnown RBP6.01□□□□□ -1.45
COL28A1-205ENST00000453441 LINC00588Q9Y4M8 146 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 TNFRSF18Q9Y5U5 241 aa6.01□□□□□ -1.45
COL28A1-205ENST00000453441 TRAV8-6A0A0B4J262 113 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 LOC100131303A0A0U1RQF7 123 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 A0A1B0GXF2 115 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 C7orf77A4D0Y5 90 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 APOC3P02656 99 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 BTF3P20290 206 aaKnown RBP6□□□□□ -1.45
COL28A1-205ENST00000453441 PKIAP61925 76 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 COX19Q49B96 90 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 TTC32Q5I0X7 151 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 LELP1Q5T871 98 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 NEXN-AS1Q8NBZ9 246 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 ZNRF2Q8NHG8 242 aa6□□□□□ -1.45
COL28A1-205ENST00000453441 PPBPP02775 128 aa5.99□□□□□ -1.45
COL28A1-205ENST00000453441 CAMPP49913 170 aa5.99□□□□□ -1.45
COL28A1-205ENST00000453441 FAM104BQ5XKR9 115 aa5.99□□□□□ -1.45
COL28A1-205ENST00000453441 TRAV9-2A0A087WT02 112 aa5.98□□□□□ -1.45
COL28A1-205ENST00000453441 TRBV6-5A0A0K0K1A5 114 aa5.98□□□□□ -1.45
COL28A1-205ENST00000453441 SIVA1O15304 175 aa5.98□□□□□ -1.45
COL28A1-205ENST00000453441 RAB4AP20338 218 aa5.98□□□□□ -1.45
COL28A1-205ENST00000453441 MRPL54Q6P161 138 aaKnown RBP5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms