RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SPANXA1Q9NS26 97 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 CBY1Q9Y3M2 126 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 PFN2P35080 140 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 CST9LQ9H4G1 147 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 XCL1P47992 114 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 LINC00482Q8N8I6 264 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 UBE2WQ96B02 151 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 NDUFA12Q9UI09 145 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 C2CD3Q4AC94 2353 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 PRUNE2Q8WUY3 3088 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 IGKV2D-24A0A075B6R9 120 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 SPINK8P0C7L1 97 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 CRIP2P52943 208 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-213ENST00000448038 CCL18P55774 89 aa5.55□□□□□ -1.52
SYNE1-213ENST00000448038 MTORP42345 2549 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 COA6Q5JTJ3 125 aaKnown RBP5.54□□□□□ -1.52
SYNE1-213ENST00000448038 ZFAND2AQ8N6M9 145 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 KIR3DS1Q14943 382 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 Q9HAA7 133 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 NUPR1O60356 82 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 ANKRD17O75179 2603 aaKnown RBP5.54□□□□□ -1.52
SYNE1-213ENST00000448038 SAMD5Q5TGI4 173 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 Q6ZTI0 123 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 NAA38Q9BRA0 125 aaKnown RBP5.54□□□□□ -1.52
SYNE1-213ENST00000448038 TRAV4A0A0B4J268 109 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 GHRHP01286 108 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 IGLC6P0CF74 106 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 AMTNQ6UX39 209 aa5.54□□□□□ -1.52
SYNE1-213ENST00000448038 CRIP1P50238 77 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 GATD1Q8NB37 220 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 PRO0255Q9UI72 69 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 F8W735 103 aaPredicted RBP5.53□□□□□ -1.52
SYNE1-213ENST00000448038 J3QQQ9 107 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 RPL39P62891 51 aaKnown RBP5.53□□□□□ -1.52
SYNE1-213ENST00000448038 A0A1B0GXF2 115 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 NXPH4O95158 308 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 IGHV3-30P01768 117 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 IGHV3-33P01772 117 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 IGHV3-30-3P0DP02 117 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 IGHV3-30-5P0DP03 117 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 SMIM9A6NGZ8 99 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 IGLC3P0DOY3 106 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 LINC00173Q6ZV60 143 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 C1orf43Q9BWL3 253 aa5.53□□□□□ -1.52
SYNE1-213ENST00000448038 IGLV2-11P01706 119 aa5.52□□□□□ -1.53
SYNE1-213ENST00000448038 COX8AP10176 69 aa5.52□□□□□ -1.53
SYNE1-213ENST00000448038 FAM222AQ5U5X8 452 aa5.52□□□□□ -1.53
SYNE1-213ENST00000448038 C5orf38Q86SI9 138 aa5.52□□□□□ -1.53
SYNE1-213ENST00000448038 DCANP1Q8TF63 244 aa5.52□□□□□ -1.53
SYNE1-213ENST00000448038 LAMA2P24043 3122 aaKnown RBP5.52□□□□□ -1.53
SYNE1-213ENST00000448038 WFDC10AQ9H1F0 79 aa5.52□□□□□ -1.53
SYNE1-213ENST00000448038 ACANP16112 2415 aa5.52□□□□□ -1.53
SYNE1-213ENST00000448038 FGF6P10767 208 aa5.52□□□□□ -1.53
SYNE1-213ENST00000448038 IGLV10-54A0A075B6I4 117 aa5.52□□□□□ -1.53
SYNE1-213ENST00000448038 TRBV10-1A0A0K0K1A3 114 aa5.52□□□□□ -1.53
SYNE1-213ENST00000448038 EDN2P20800 178 aa5.51□□□□□ -1.53
SYNE1-213ENST00000448038 C11orf45Q8TAV5 145 aa5.51□□□□□ -1.53
SYNE1-213ENST00000448038 PGPEP1Q9NXJ5 209 aa5.51□□□□□ -1.53
SYNE1-213ENST00000448038 A0A0J9YXV3 536 aa5.51□□□□□ -1.53
SYNE1-213ENST00000448038 MAJINQ3KP22 176 aa5.51□□□□□ -1.53
SYNE1-213ENST00000448038 P0DMU3 169 aa5.51□□□□□ -1.53
SYNE1-213ENST00000448038 FAM231AP0DMU4 169 aa5.51□□□□□ -1.53
SYNE1-213ENST00000448038 FAM231CP0DMU5 169 aa5.51□□□□□ -1.53
SYNE1-213ENST00000448038 VSIG2Q96IQ7 327 aa5.51□□□□□ -1.53
SYNE1-213ENST00000448038 ZNF580Q9UK33 172 aa5.51□□□□□ -1.53
SYNE1-213ENST00000448038 FAM110AQ9BQ89 295 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 LYRM9A8MSI8 78 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 BRI3O95415 125 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 C16orf95Q9H693 158 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 IGLL5B9A064 214 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 EREGO14944 169 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 ATXN8Q156A1 80 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 MRGPRG-AS1Q2M3A8 158 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 TOMM6Q96B49 74 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 TRAV26-1A0A087WT03 109 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 OXLD1Q5BKU9 147 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 SLC25A29Q8N8R3 303 aa5.5□□□□□ -1.53
SYNE1-213ENST00000448038 PRR9Q5T870 116 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 Q9H8V8 135 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 MRPS12O15235 138 aaKnown RBP5.49□□□□□ -1.53
SYNE1-213ENST00000448038 NKAPP1Q8N9T2 125 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 KLK5Q9Y337 293 aaPredicted RBP5.49□□□□□ -1.53
SYNE1-213ENST00000448038 MIFP14174 115 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 C20orf203Q8NBC4 194 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 TIMM17AQ99595 171 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 SPATA25Q9BR10 227 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 KLLNB2CW77 178 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 LINC01545Q5VT33 79 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 BAALCQ8WXS3 180 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 COX7A2LO14548 114 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 SCGB1A1P11684 91 aa5.49□□□□□ -1.53
SYNE1-213ENST00000448038 MRPL52Q86TS9 123 aaKnown RBP5.48□□□□□ -1.53
SYNE1-213ENST00000448038 KLK12Q9UKR0 248 aa5.48□□□□□ -1.53
SYNE1-213ENST00000448038 PCP2Q8IVA1 136 aa5.48□□□□□ -1.53
SYNE1-213ENST00000448038 C11orf21Q9P2W6 132 aa5.48□□□□□ -1.53
SYNE1-213ENST00000448038 ODF3L2Q3SX64 289 aa5.47□□□□□ -1.53
SYNE1-213ENST00000448038 CFAP126Q5VTH2 177 aa5.47□□□□□ -1.53
SYNE1-213ENST00000448038 A0A0C4DFX4 3053 aa5.47□□□□□ -1.53
SYNE1-213ENST00000448038 TRAV12-1A0A0B4J245 112 aa5.47□□□□□ -1.53
SYNE1-213ENST00000448038 RNASE3P12724 160 aaKnown RBP5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 190.8 ms